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python
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0
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2
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714
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TnSeq as ZINB? Alternatives in R?
DESeq2
R
edgeR
Python
TnSeq
updated 16 months ago by
chaco001
• 0 • written 17 months ago by
David R
▴ 90
1
vote
0
replies
795
views
Job:
Bioconductor Core developers group opening
R
cloud
github
python
git
20 months ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
891
views
Change the interval of bed file
mappability
bed
python
updated 2.3 years ago by
James W. MacDonald
65k • written 2.3 years ago by
the
• 0
0
votes
1
reply
807
views
python and R
snpeff
python
tophat
r
RNAseq123
updated 2.7 years ago by
Kevin Blighe
★ 3.9k • written 2.7 years ago by
kusum
• 0
0
votes
0
replies
830
views
Job:
Senior Data Engineer | Poland | remote
AWS
BigData
Engineer
python
3.0 years ago
Ewa
• 0
1
vote
2
replies
1.5k
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq
python
gtf
gff3
annotation
4.0 years ago
Raito92
▴ 60
1
vote
2
replies
1.3k
views
Load data with rhdf5
rhdf5
python
updated 14 months ago by
alex46015
• 0 • written 4.0 years ago by
jose.wo
• 0
2
votes
4
replies
1.1k
views
Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R
python
normalization
matrix
updated 4.7 years ago by
shahryary
▴ 30 • written 4.7 years ago by
mohammedtoufiq91
▴ 10
0
votes
0
replies
942
views
Job:
Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS
BIOINFORMATICS
SEATTLE
R
PYTHON
Job
4.7 years ago
Fred Hutch (Recruiting)
▴ 40
0
votes
0
replies
846
views
Job:
Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R
Python
Computational-Biology
Cancer
Job
5.1 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
1.0k
views
Job:
Bioinformatics Scientist II
bioinformatics
scientist
python
computational
Job
5.2 years ago
careers
• 0
0
votes
0
replies
1.0k
views
Job:
2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job
rna-seq
chipseq
gsea
python
Job
5.7 years ago
l.brown
▴ 10
1
vote
1
reply
778
views
Python functionality feature request
python
bioconductor
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
quijotejmartinez
• 0
0
votes
0
replies
1.2k
views
Job:
Bioinformatics Engineer / Data Analyst
python
bio
ngs
linux
Job
6.1 years ago
EMBL Recruitment
• 0
2
votes
0
replies
1.2k
views
Job:
Full-time bioinformatics instructor position at Fred Hutch
R
shell
Python
SQL
Job
6.2 years ago
ematsen
▴ 20
5
votes
0
replies
1.4k
views
Job:
Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R
python
deep learning
machine learning
cancer genomics
Job
7.1 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
1.4k
views
Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
stats
bioinformatics
perl
Job
7.7 years ago
clif.duhn
• 0
0
votes
0
replies
1.8k
views
Job:
Bioinformatics Programmer (Statistician) at University of California at San Francisco
R
bioinformatician job
Perl
Python
statistics
Job
8.0 years ago • updated 7.7 years ago
clif.duhn
• 0
0
votes
0
replies
1.9k
views
Job:
Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics
data science
python
SQL
Job
8.2 years ago
Doe, Aimee
▴ 40
5
votes
23
replies
6.2k
views
Convertion of indexed bam file to tsv file format
python
samtools
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
malikbashirkhan2
• 0
0
votes
0
replies
1.5k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
8.5 years ago
Fiona
▴ 70
3
votes
4
replies
1.6k
views
seq2pathway error on Mac OS X
seq2pathway
error
python
mac os x
8.6 years ago
termanini
▴ 10
0
votes
0
replies
1.6k
views
Job:
Calling all Clinical Genomic Scientist
computational biology
genomics
genetics
Python
java
Job
8.8 years ago
careers
• 0
23 results • Page
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Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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