updated 2.8 years ago by
James W. MacDonald
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written 2.8 years ago by
Mozart
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
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I felt that my way of analyzing this data set was a bit unfortunate.
I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
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0
For tissue T1 and each time point, each replicate corresponds to a single plant.
For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
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0
Yes you are right, we have 24 RNA-seq libraries in total.
The replicates come from the same population of plants, but independent from tho…
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