Bioconductor Swish

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DESeq2 fishpond salmon swish

3.4 years ago • updated 3.3 years ago Qin ▴ 10

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tximport DESeq2 edgeR swish miRNA

updated 2.6 years ago by Michael Love 43k • written 2.6 years ago by BG • 0

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swish fishpond GenomicFeatures tximeta

updated 2.5 years ago by Michael Love 43k • written 2.8 years ago by jvandinter • 0

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salmon rna-seq swish bootstrap fishpond

updated 2.9 years ago by Michael Love 43k • written 2.9 years ago by samuelcjx • 0

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fishpond swish

2.9 years ago msll0802 • 0

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tximeta swish fishpond

updated 3.7 years ago by Michael Love 43k • written 3.7 years ago by Jack Riley • 0

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swish fishpond DifferentialExpression

2.5 years ago jvandinter • 0

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1.6k

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Swish fishpond

4.0 years ago • updated 3.9 years ago 675743 ▴ 20

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1.6k

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swish fishpond

4.3 years ago thomas.dugedebernonville • 0

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1.3k

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fishpond swish

19 months ago Miguel ▴ 20

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1.3k

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tximeta DESeq2 swish fishpond

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by jeremymsimon ▴ 20

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1.1k

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fishpond swish

updated 4.6 years ago by Michael Love 43k • written 4.6 years ago by 1911449 • 0

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945

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rna-seq salmon fishpond swish

updated 19 months ago by Michael Love 43k • written 19 months ago by samuelcjx • 0

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647

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swish salmon fishpond

updated 12 months ago by Michael Love 43k • written 12 months ago by Nicholas • 0

14 results • Page 1 of 1

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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 740

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Comment: EdgeR Biological CVs by ATpoint ★ 4.6k

"Joseph" is a spam bot...

Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k

GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…

Votes

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

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