Bioconductor Swish

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629

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fishpond swish

3 months ago Miguel ▴ 20

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373

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rna-seq salmon fishpond swish

updated 3 months ago by Michael Love 40k • written 3 months ago by samuelcjx • 0

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958

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swish fishpond DifferentialExpression

13 months ago jvandinter • 0

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1.1k

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tximport DESeq2 edgeR swish miRNA

updated 15 months ago by Michael Love 40k • written 15 months ago by BG • 0

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1.2k

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swish fishpond GenomicFeatures tximeta

updated 13 months ago by Michael Love 40k • written 17 months ago by jvandinter • 0

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1.0k

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fishpond swish

19 months ago msll0802 • 0

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960

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salmon rna-seq swish bootstrap fishpond

updated 19 months ago by Michael Love 40k • written 19 months ago by samuelcjx • 0

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707

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tximeta DESeq2 swish fishpond

updated 20 months ago by Michael Love 40k • written 20 months ago by jeremymsimon ▴ 20

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1.4k

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DESeq2 fishpond salmon swish

2.0 years ago Qin ▴ 10

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1.0k

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tximeta swish fishpond

updated 2.4 years ago by Michael Love 40k • written 2.4 years ago by Jack Riley • 0

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909

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Swish fishpond

2.6 years ago 675743 ▴ 10

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973

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swish fishpond

3.0 years ago thomas.dugedebernonville • 0

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612

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fishpond swish

updated 3.3 years ago by Michael Love 40k • written 3.3 years ago by 1911449 • 0

13 results • Page 1 of 1

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Comment: LIMMA dupcor() function time issue. by Gordon Smyth 48k

That's ok, but there is nothing to be gained by subsetting 1000 times. It would be better to simply subset 100,000 rows once, although the …

Comment: Specifying evidence channels in STRINGdb by robynne.braun • 0

Also I found prior thread here addressing the same question with response that functionality will be supported someday. This was a few year…

Comment: Problems with FLOWAI by SHASHI • 0

please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA

Comment: DataFrame Construction With Non-standard Column by Hervé Pagès 16k

SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…

Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by swbarnes2 ★ 1.3k

The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…

Votes

Answer: Deseq2, enrichGO and ensembl ID

A: LIMMA dupcor() function time issue.

Answer: Further analysis after limma regression output

A: collapseReplicates in DESeq2

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