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Showing :
swish
•
reset
4
votes
7
replies
629
views
Fishpond/Swish Interaction Test Error
fishpond
swish
3 months ago
Miguel
▴ 20
0
votes
3
replies
373
views
Fishpond with unbalanced dataset
rna-seq
salmon
fishpond
swish
updated 3 months ago by
Michael Love
40k • written 3 months ago by
samuelcjx
• 0
0
votes
8
replies
958
views
Swish log2FC NA output
swish
fishpond
DifferentialExpression
13 months ago
jvandinter
• 0
1
vote
3
replies
1.1k
views
miRNA differential expression analysis - treat as transcript level?
tximport
DESeq2
edgeR
swish
miRNA
updated 15 months ago by
Michael Love
40k • written 15 months ago by
BG
• 0
5
votes
9
replies
1.2k
views
Questions regarding failing tximeta import for swish
swish
fishpond
GenomicFeatures
tximeta
updated 13 months ago by
Michael Love
40k • written 17 months ago by
jvandinter
• 0
0
votes
8
replies
1.0k
views
swish in a blocking design?
fishpond
swish
19 months ago
msll0802
• 0
1
vote
3
replies
960
views
Two Genotypes Four Treatments RNA-seq Analysis
salmon
rna-seq
swish
bootstrap
fishpond
updated 19 months ago by
Michael Love
40k • written 19 months ago by
samuelcjx
• 0
1
vote
1
reply
707
views
Swish with more than two conditions. Add support for contrasts?
tximeta
DESeq2
swish
fishpond
updated 20 months ago by
Michael Love
40k • written 20 months ago by
jeremymsimon
▴ 20
2
votes
2
replies
1.4k
views
Volcano plots of DEGs from Swish are weird
DESeq2
fishpond
salmon
swish
2.0 years ago
Qin
▴ 10
0
votes
6
replies
1.0k
views
Running swish on a non-reference transcript assembly / tximeta import issue
tximeta
swish
fishpond
updated 2.4 years ago by
Michael Love
40k • written 2.4 years ago by
Jack Riley
• 0
1
vote
5
replies
909
views
Swish (fishpond) scaled counts result
Swish
fishpond
2.6 years ago
675743
▴ 10
3
votes
6
replies
973
views
Swish with covariate for batch effect
swish
fishpond
3.0 years ago
thomas.dugedebernonville
• 0
2
votes
2
replies
612
views
the result of swish function from fishpond package
fishpond
swish
updated 3.3 years ago by
Michael Love
40k • written 3.3 years ago by
1911449
• 0
13 results • Page
1 of 1
Recent ...
Replies
Comment: LIMMA dupcor() function time issue.
by
Gordon Smyth
48k
That's ok, but there is nothing to be gained by subsetting 1000 times. It would be better to simply subset 100,000 rows once, although the …
Comment: Specifying evidence channels in STRINGdb
by
robynne.braun
• 0
Also I found prior thread here addressing the same question with response that functionality will be supported someday. This was a few year…
Comment: Problems with FLOWAI
by
SHASHI
• 0
please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA
Comment: DataFrame Construction With Non-standard Column
by
Hervé Pagès
16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
by
swbarnes2
★ 1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
Votes
Answer: Deseq2, enrichGO and ensembl ID
A: LIMMA dupcor() function time issue.
A: LIMMA dupcor() function time issue.
Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
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