Bioconductor Fishpond

Showing : fishpond • reset

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627

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fishpond swish

3 months ago Miguel ▴ 20

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372

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rna-seq salmon fishpond swish

updated 3 months ago by Michael Love 40k • written 3 months ago by samuelcjx • 0

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412

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fishpond tximeta DESeq2

7 months ago Rihards Saksis • 0

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602

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fishpond DESeq2

updated 5 months ago by Michael Love 40k • written 13 months ago by alexyz • 0

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955

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swish fishpond DifferentialExpression

13 months ago jvandinter • 0

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1.2k

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swish fishpond GenomicFeatures tximeta

updated 13 months ago by Michael Love 40k • written 17 months ago by jvandinter • 0

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1.0k

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fishpond swish

19 months ago msll0802 • 0

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958

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salmon rna-seq swish bootstrap fishpond

updated 19 months ago by Michael Love 40k • written 19 months ago by samuelcjx • 0

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705

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tximeta DESeq2 swish fishpond

updated 20 months ago by Michael Love 40k • written 20 months ago by jeremymsimon ▴ 20

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779

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fishpond

2.0 years ago Jean • 0

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1.4k

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DESeq2 fishpond salmon swish

2.0 years ago Qin ▴ 10

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1.0k

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tximeta swish fishpond

updated 2.4 years ago by Michael Love 40k • written 2.4 years ago by Jack Riley • 0

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909

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Swish fishpond

2.6 years ago 675743 ▴ 10

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973

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swish fishpond

2.9 years ago thomas.dugedebernonville • 0

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611

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fishpond swish

updated 3.3 years ago by Michael Love 40k • written 3.3 years ago by 1911449 • 0

15 results • Page 1 of 1

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Comment: DataFrame Construction With Non-standard Column by ATpoint ★ 3.4k

Out of interest, `SimpleList()` works without `I()`, why is that?

Answer: DataFrame Construction With Non-standard Column by Hervé Pagès 16k

You need to protect the list by wrapping it in `I()`, otherwise the `DataFrame()` constructor interprets it as a list of 3 columns (so it t…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…

Votes

Answer: Further analysis after limma regression output

A: collapseReplicates in DESeq2

Answer: DataFrame Construction With Non-standard Column

Steps needed to change design (relevel factors) in DESeq2

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