Showing : syntenet • reset
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Syntenet error in infer_syntenet() Error in blast_list[[1]] : subscript out of bounds
syntenet
updated 21 months ago by ▴ 40 • written 22 months ago by • 0
0
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1
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695
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question about data processing for syntenet
syntenet
updated 21 months ago by ▴ 40 • written 23 months ago by • 0
0
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4
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777
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Error in classify_gene_pairs
syntenet doubletrouble
21 months ago hfyuan2016 • 0
0
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2
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1.1k
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MIcrosynteny block information - Syntenet
syntenet microsynteny blocks synteny
written 2.4 years ago by • 0
0
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1
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1.1k
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Syntenet application to bacterial genome and file processing
syntenet Bacteria synteny
updated 23 months ago by ▴ 40 • written 2.1 years ago by • 0
1
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10
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3.1k
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Interprteting the phylogenomic profiles plot
syntenet synteny Network
written 3.0 years ago by • 0
0
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3
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1.3k
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Clustering coefficient of synteny network
Network syntenet Clustering coefficient
2.4 years ago Alexandros • 0
2
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8
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2.3k
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Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
syntenet
updated 23 months ago by • 0 • written 2.9 years ago by • 0
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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