Bioconductor Syntenet

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syntenet

updated 19 months ago by Fabricio Almeida-Silva ▴ 40 • written 20 months ago by Sujeevan • 0

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655

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syntenet

updated 19 months ago by Fabricio Almeida-Silva ▴ 40 • written 21 months ago by Sujeevan • 0

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syntenet doubletrouble

19 months ago hfyuan2016 • 0

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1.0k

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syntenet microsynteny blocks synteny

written 2.2 years ago by Alexandros • 0

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1.0k

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syntenet Bacteria synteny

updated 21 months ago by Fabricio Almeida-Silva ▴ 40 • written 23 months ago by kluongni • 0

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syntenet synteny Network

written 2.9 years ago by Alexandros • 0

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Network syntenet Clustering coefficient

2.3 years ago • updated 2.2 years ago Alexandros • 0

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2.2k

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syntenet

updated 21 months ago by Sujeevan • 0 • written 2.8 years ago by lwanderson8c • 0

8 results • Page 1 of 1

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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