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syntenet
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4
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259
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Error in classify_gene_pairs
syntenet
doubletrouble
6 weeks ago
hfyuan2016
• 0
0
votes
1
reply
241
views
Syntenet error in infer_syntenet() Error in blast_list[[1]] : subscript out of bounds
syntenet
updated 6 weeks ago by
Fabricio Almeida-Silva
▴ 40 • written 12 weeks ago by
Sujeevan
• 0
0
votes
1
reply
280
views
question about data processing for syntenet
syntenet
updated 6 weeks ago by
Fabricio Almeida-Silva
▴ 40 • written 3 months ago by
Sujeevan
• 0
0
votes
1
reply
605
views
Syntenet application to bacterial genome and file processing
syntenet
Bacteria
synteny
updated 4 months ago by
Fabricio Almeida-Silva
▴ 40 • written 6 months ago by
kluongni
• 0
0
votes
2
replies
563
views
MIcrosynteny block information - Syntenet
syntenet
microsynteny
blocks
synteny
written 9 months ago by
Alexandros
• 0
0
votes
3
replies
561
views
Clustering coefficient of synteny network
Network
syntenet
Clustering
coefficient
9 months ago
Alexandros
• 0
2
votes
8
replies
1.3k
views
Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
syntenet
updated 3 months ago by
Sujeevan
• 0 • written 16 months ago by
lwanderson8c
• 0
1
vote
10
replies
2.0k
views
Interprteting the phylogenomic profiles plot
syntenet
synteny
Network
written 17 months ago by
Alexandros
• 0
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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