Bioconductor Test fisher exact

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2.6k

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R test fisher exact workspace

updated 7.0 years ago by Aaron Lun ★ 29k • written 7.0 years ago by Sara ▴ 20

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2.0k

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edgeR deanalysis test fisher exact

updated 7.7 years ago by Aaron Lun ★ 29k • written 7.7 years ago by thkapell ▴ 10

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1.5k

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test fisher exact EmpiricalBrownsMethod affy

updated 9.6 years ago by Gordon Smyth 53k • written 9.6 years ago by tofukaj • 0

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3.4k

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test fisher exact r findoverlapsofpeaks

written 9.8 years ago by Jurat Shahidin ▴ 80

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2.0k

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test fisher exact

11.0 years ago sleidymagaly • 0

5 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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