Bioconductor Tidyomics

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GenomicRanges tidySummarizedExperiment tidyomics

6 months ago • updated 5 weeks ago Kateřina • 0

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JobPosting CuratedAtlasQueryR tidySpatialExperiment tidyomics tidySingleCellExperiment

written 16 months ago by Stefano Mangiola ▴ 40

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tidyomics

written 14 months ago by Ariel • 0

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

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Comment: Check removeBatchEffect effectiveness

Answer: DESeq2 design for haplotype MPRA

Comment: Check removeBatchEffect effectiveness

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