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tissueenrich
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Example from TissueEnrich documentation throws error
TissueEnrich
2.6 years ago
sarvesh.nikumbh
▴ 10
0
votes
4
replies
1.0k
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Gene classification in TissueEnrich
TissueEnrich
updated 3.7 years ago by
Ashish Jain
▴ 10 • written 3.7 years ago by
xiaoxiaoxiaobu
• 0
0
votes
2
replies
718
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can TissueEnrich be used to calculate the tissue-specific lncRNAs in plants?
TissueEnrich
updated 5.0 years ago by
Ashish Jain
▴ 10 • written 5.0 years ago by
Carina Yang
• 0
0
votes
1
reply
811
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Overall genes number in the TissueEnrich package output
TissueEnrich
updated 5.3 years ago by
Ashish Jain
▴ 10 • written 5.3 years ago by
fshodan
• 0
0
votes
3
replies
1.5k
views
How to handle replicates and treatment conditions in TissueEnrich package
rna-seq
TissueEnrich
tissue-specific expression
differential expression
updated 5.4 years ago by
Ashish Jain
▴ 10 • written 5.4 years ago by
andrew.oler
• 0
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Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq?
by
baptiste.bidon
• 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
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how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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