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transcriptr
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Problem installing packages including flowWorkspace
transcriptR
updated 2.9 years ago by
shepherl
3.8k • written 2.9 years ago by
Alice
▴ 10
0
votes
0
replies
934
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transcriptR predictStrand Error: subscript contains invalid names
transcriptR
predictStrand
4.5 years ago
jason.williams
• 0
1
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4
replies
1.3k
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transcriptR ChIP-seq RNA-seq bam Error in mergeNamedAtomicVectors
TranscriptR
RNA-seq
ChIP-seq
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
jason.williams
• 0
0
votes
6
replies
830
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Cannot put file path in for bam file when attempting to construct a TDS in transcriptR
transcriptR
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
jason.williams
• 0
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Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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