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variants
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Results with PON give more variants
mutect2
variants
pon
written 3 months ago by
ramiro.barrantes
▴ 10
0
votes
1
reply
1.6k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 5.0 years ago by
zlskidmore
▴ 30 • written 5.0 years ago by
Jeni
▴ 10
0
votes
1
reply
1.4k
views
Bioconductor and WGS: recommended practices?
whole genome sequencing
variants
vcf
WGS
6.8 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
1.6k
views
Annotating outdated SNP identifiers
variants
variantannotation
SNPlocs.Hsapiens.dbSNP150.GRCh38
biomaRt
7.7 years ago
sandmann.t
▴ 70
0
votes
1
reply
1.6k
views
Extension to GoogleGenomics: getVariantCalls
GoogleGenomics
genetics
variants
8.8 years ago
Vincent J. Carey, Jr.
6.7k
5 results • Page
1 of 1
Recent ...
Replies
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Matthew Thornton
▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated
by
RalphSavage99
• 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2
by
shepherl
4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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