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variants
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0
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Results with PON give more variants
mutect2
variants
pon
written 6 months ago by
ramiro.barrantes
▴ 10
0
votes
1
reply
1.7k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 5.2 years ago by
zlskidmore
▴ 30 • written 5.2 years ago by
Jeni
▴ 10
0
votes
1
reply
1.5k
views
Bioconductor and WGS: recommended practices?
whole genome sequencing
variants
vcf
WGS
7.0 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
1.7k
views
Annotating outdated SNP identifiers
variants
variantannotation
SNPlocs.Hsapiens.dbSNP150.GRCh38
biomaRt
7.9 years ago
sandmann.t
▴ 70
0
votes
1
reply
1.6k
views
Extension to GoogleGenomics: getVariantCalls
GoogleGenomics
genetics
variants
9.0 years ago
Vincent J. Carey, Jr.
6.7k
5 results • Page
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Answer: [LIBD rstats club] Bioconductor overview
by
Kk33 game
• 0
The LIBD Rstats Club Bioconductor overview is a great introduction for understanding how different packages work together in a structured e…
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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