Bioconductor GenVisR

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GenVisR GenCov

2.6 years ago Amy_ • 0

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GenVisR GenVis

updated 17 months ago by zlskidmore ▴ 30 • written 2.8 years ago by abhisikta • 0

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Install mainDropMut GenVisR

updated 2.9 years ago by Hervé Pagès 16k • written 2.9 years ago by Michel • 0

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GenVisR maftools

2.9 years ago e • 0

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variants waterfall GenVisR

updated 4.5 years ago by zlskidmore ▴ 30 • written 4.5 years ago by Jeni ▴ 10

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GenVisR ggplot2 waterfall

5.5 years ago sheneicechang • 0

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GenVisR mutation frequency R cancer bioconductor

5.6 years ago sheneicechang • 0

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GenVisr genvisr waterfall mutation

updated 6.4 years ago by zlskidmore ▴ 30 • written 6.5 years ago by ZihaoXing • 0

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genvisr lohSpec

6.8 years ago dharia.priyadarshani • 0

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genvisr

6.9 years ago cedric.vmdl • 0

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GenVisR

7.3 years ago daijieqiong ▴ 10

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GenVisR

updated 8.2 years ago by zlskidmore ▴ 30 • written 8.2 years ago by Bogdan ▴ 670

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genvisR

9.2 years ago Deep Adhya ▴ 20

13 results • Page 1 of 1

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Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Votes

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

A: Normalized counts from DESeq2 results in similar but not equal total read count?

A: DESeq2: Different Dispersions for different sample groups

A: Contrasts & coefficients in limma

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Great Question to inzirio ▴ 10