Bioconductor Volcano

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DESeq2 volcano

updated 19 months ago by Michael Love 41k • written 20 months ago by nico • 0

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plot volcano volcanoplot

updated 14 months ago by Basti ▴ 780 • written 14 months ago by Sooni ▴ 10

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DESeq2 adjp Volcano LRT

written 17 months ago by Laia ▴ 10

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Comment: Assist me in determining whether the analysis process using the limma package ha by SSSJec • 0

Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…

Comment: Why p value inconsistent when using different number of pathway score? by Gordon Smyth 50k

Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by Chris • 0

Thank you! The resource I use may mispresent the requirement input of fgsea.

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by alserg ▴ 260

fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…

Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Thanks Robert for an educative response!

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Popular Question to Matthew Ritchie ▴ 1000

Scholar to alserg ▴ 260