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volcanoplot
•
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0
votes
4
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574
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Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 7 months ago by
Basti
▴ 720 • written 7 months ago by
Michael
• 0
0
votes
1
reply
394
views
part of the volcano plot does not appear.
plot
volcano
volcanoplot
updated 7 months ago by
Basti
▴ 720 • written 7 months ago by
Sooni
▴ 10
0
votes
1
reply
347
views
Assigning the name of top 100 DE transcripts/genes to Volcano plot
limma
DEGreport
Volcanoplot
updated 9 months ago by
Gordon Smyth
48k • written 9 months ago by
Mohammad
• 0
3
votes
5
replies
1.5k
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 2.9 years ago by
Kevin Blighe
3.8k • written 2.9 years ago by
camillab.
▴ 10
1
vote
5
replies
1.8k
views
Why the p value and logFC calculated by limma is so small
limma
volcanoplot
pvalue
logFC
updated 4.6 years ago by
Gordon Smyth
48k • written 4.6 years ago by
xingxd16
▴ 20
0
votes
4
replies
6.2k
views
Limma Volcano Plot Highlight Top Genes by Color
limma
microarray
volcanoplot
color
updated 5.0 years ago by
Gordon Smyth
48k • written 5.0 years ago by
dmm204
• 0
2
votes
4
replies
6.8k
views
Volcano Plot (highlighting top genes in a different color)
volcanoplot
updated 5.9 years ago by
thokall
▴ 160 • written 5.9 years ago by
Nithisha
▴ 10
0
votes
1
reply
865
views
Pseudo-coloring DiffBind volcano plot
diffbind
chipseq
volcanoplot
ggplot2
updated 6.0 years ago by
Rory Stark
★ 5.0k • written 6.0 years ago by
rbronste
▴ 60
0
votes
2
replies
1.5k
views
Draw volcano plot by modifying contrast matrix (lumi package)
volcanoplot
design and contrast matrix
updated 6.0 years ago by
Gordon Smyth
48k • written 6.0 years ago by
marongiu.luigi
• 0
10
votes
3
replies
7.5k
views
Volcanoplot with limma - RAW P-values or Adj.P-Values
volcanoplot
limma
fdr
6.2 years ago • updated 2.9 years ago
tcalvo
▴ 90
5
votes
4
replies
6.2k
views
Volcano plot labeling troubles
limma
volcanoplot
updated 6.2 years ago by
Gordon Smyth
48k • written 8.9 years ago by
mccallionc403
• 0
0
votes
2
replies
1.1k
views
volcano plot in Limma
limma
volcanoplot
updated 7.4 years ago by
Aaron Lun
★ 28k • written 7.4 years ago by
mheydarpour
▴ 10
7
votes
4
replies
5.3k
views
Gene symbols on MA-plot
limma
plot.MA
volcanoplot
oligo
updated 8.3 years ago by
Gordon Smyth
48k • written 8.3 years ago by
Gabriel Nathan Kaufman, Mr
▴ 60
2
votes
2
replies
2.8k
views
cummeRbund change point size in volcano plot
cummerbund
ggplot2
size
r
volcanoplot
updated 8.8 years ago by
James W. MacDonald
63k • written 8.8 years ago by
ianmisner17
▴ 20
14 results • Page
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Replies
Answer: tximport error: vroom
by
Michael Love
40k
Check that they all have same number of lines. I guess one of them was interrupted while writing out and may need to be re-run (Salmon).
Comment: tximport error: vroom
by
Kevin Blighe
3.8k
Cross-posted: https://www.biostars.org/p/9576578/
Comment: Exporting DESeq2 filtered results
by
James W. MacDonald
63k
I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…
Votes
Comment: Speeding up of DelayedArray::write_block()
Comment: Speeding up of DelayedArray::write_block()
Unclear of calculating correlations with case+control samples together
Answer: Error MakeOrgPackagefromNCBI
Batch Effect in DESeq2, how to control, how to remove it, how to address biological question
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