Bioconductor Volcanoplot

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574

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DESeq2 volcanoplot deseq HELP contrast

updated 7 months ago by Basti ▴ 720 • written 7 months ago by Michael • 0

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394

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plot volcano volcanoplot

updated 7 months ago by Basti ▴ 720 • written 7 months ago by Sooni ▴ 10

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347

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limma DEGreport Volcanoplot

updated 9 months ago by Gordon Smyth 48k • written 9 months ago by Mohammad • 0

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EnhancedVolcano RNASeqR R volcanoplot

updated 2.9 years ago by Kevin Blighe 3.8k • written 2.9 years ago by camillab. ▴ 10

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1.8k

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limma volcanoplot pvalue logFC

updated 4.6 years ago by Gordon Smyth 48k • written 4.6 years ago by xingxd16 ▴ 20

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6.2k

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limma microarray volcanoplot color

updated 5.0 years ago by Gordon Smyth 48k • written 5.0 years ago by dmm204 • 0

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6.8k

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volcanoplot

updated 5.9 years ago by thokall ▴ 160 • written 5.9 years ago by Nithisha ▴ 10

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865

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diffbind chipseq volcanoplot ggplot2

updated 6.0 years ago by Rory Stark ★ 5.0k • written 6.0 years ago by rbronste ▴ 60

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1.5k

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volcanoplot design and contrast matrix

updated 6.0 years ago by Gordon Smyth 48k • written 6.0 years ago by marongiu.luigi • 0

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7.5k

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volcanoplot limma fdr

6.2 years ago • updated 2.9 years ago tcalvo ▴ 90

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6.2k

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limma volcanoplot

updated 6.2 years ago by Gordon Smyth 48k • written 8.9 years ago by mccallionc403 • 0

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limma volcanoplot

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by mheydarpour ▴ 10

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limma plot.MA volcanoplot oligo

updated 8.3 years ago by Gordon Smyth 48k • written 8.3 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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2.8k

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cummerbund ggplot2 size r volcanoplot

updated 8.8 years ago by James W. MacDonald 63k • written 8.8 years ago by ianmisner17 ▴ 20

14 results • Page 1 of 1

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Answer: tximport error: vroom by Michael Love 40k

Check that they all have same number of lines. I guess one of them was interrupted while writing out and may need to be re-run (Salmon).

Comment: tximport error: vroom by Kevin Blighe 3.8k

Cross-posted: https://www.biostars.org/p/9576578/

Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

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Comment: Speeding up of DelayedArray::write_block()

Unclear of calculating correlations with case+control samples together

Answer: Error MakeOrgPackagefromNCBI

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

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