Bioconductor Volcanoplot

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RNA-seq DESeq2 volcanoplot

updated 6 months ago by Michael Love 43k • written 6 months ago by nramakr ▴ 10

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847

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DESeq2 volcanoplot LRT

updated 9 months ago by Michael Love 43k • written 9 months ago by Eric • 0

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2.4k

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DESeq2 volcanoplot deseq HELP contrast

updated 2.2 years ago by Basti ▴ 780 • written 2.3 years ago by Michael • 0

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1.5k

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plot volcano volcanoplot

updated 2.3 years ago by Basti ▴ 780 • written 2.3 years ago by Sooni ▴ 10

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863

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limma DEGreport Volcanoplot

updated 2.4 years ago by Gordon Smyth 52k • written 2.4 years ago by Mohammad • 0

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3.1k

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EnhancedVolcano RNASeqR R volcanoplot

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by camillab. ▴ 10

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3.5k

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limma volcanoplot pvalue logFC

updated 6.2 years ago by Gordon Smyth 52k • written 6.2 years ago by xingxd16 ▴ 20

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7.8k

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limma microarray volcanoplot color

updated 6.6 years ago by Gordon Smyth 52k • written 6.6 years ago by dmm204 • 0

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8.2k

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volcanoplot

updated 7.5 years ago by thokall ▴ 160 • written 7.5 years ago by Nithisha ▴ 10

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1.4k

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diffbind chipseq volcanoplot ggplot2

updated 7.6 years ago by Rory Stark ★ 5.2k • written 7.6 years ago by rbronste ▴ 60

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2.2k

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volcanoplot design and contrast matrix

updated 7.6 years ago by Gordon Smyth 52k • written 7.7 years ago by marongiu.luigi • 0

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13k

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volcanoplot limma fdr

7.8 years ago • updated 4.5 years ago tcalvo ▴ 100

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8.1k

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limma volcanoplot

updated 7.8 years ago by Gordon Smyth 52k • written 10.6 years ago by mccallionc403 • 0

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1.7k

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limma volcanoplot

updated 9.1 years ago by Aaron Lun ★ 28k • written 9.1 years ago by mheydarpour ▴ 10

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6.3k

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limma plot.MA volcanoplot oligo

updated 9.9 years ago by Gordon Smyth 52k • written 9.9 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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3.5k

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cummerbund ggplot2 size r volcanoplot

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by ianmisner17 ▴ 20

16 results • Page 1 of 1

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Comment: Discrepancies in normalised count data vs unnormalised by swbarnes2 ★ 1.4k

Well, that's going to make each sample normalize quite differently. So you should expect large difference between normalized and unnormali…

Comment: Can't install BioC packages (and manager) behind firewall by Marcel Ramos 700

Hi Delphine, Please make sure that your SSL certificates are up to date. Check with your system's administrator. Your browser may be usin…

Comment: Limma trend with limpa by Alejandro • 0

Dear Gordon, Thank you very much!

Answer: DESeq2 from phyloseq error by asafpr • 0

Apparently, I left this line: ```r setClassUnion("ExpData", c("matrix", "SummarizedExperiment")) ``` to patch the ExpData issue which was …

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply! There are some pretty big discrepancies in the total raw counts between samples: ![enter image description here…

Votes

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

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Popular Question to bhanu.chandra1 • 0

Popular Question to James W. MacDonald 68k