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4
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2.0k
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Can I ignore the warnings in limma show " Coefficients not estimable" after batch correct ?
limma
batchcorrect
warnings
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
xingxd16
▴ 20
2
votes
12
replies
2.3k
views
Synapter - makeMaster() and synergise() functions warnings/fails
software error
warnings
synapter
9.4 years ago
sogueta
• 0
1
vote
2
replies
1.3k
views
Mysterious warning message: "...in .local... ignoring 'pos' argument
warnings
gostats
updated 9.0 years ago by
James W. MacDonald
65k • written 9.0 years ago by
jon.young
• 0
1
vote
3
replies
1.6k
views
DEXSeq warnings for millions of reads
DEXSeq
warnings
dexseq_count
updated 8.0 years ago by
Darya Vanichkina
▴ 120 • written 8.0 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.6k
views
DESeq2 doubts about transformations + nbinomWaldtest warning
rna-seq
deseq2
warnings
nbinomWaldTest
transformation
updated 3.8 years ago by
Michael Love
41k • written 3.8 years ago by
andreia
▴ 10
0
votes
1
reply
1.5k
views
R CMD check S3 generic/method consistency WARNING
cmd check
warnings
s3
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
anthonycolombo60
• 0
6 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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