Bioconductor Transformation

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rna-seq deseq2 warnings nbinomWaldTest transformation

updated 3.2 years ago by Michael Love 40k • written 3.2 years ago by andreia ▴ 10

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gsva gene set variation analysis normalization transformation rna-seq

5.5 years ago • updated 4.7 years ago rached ▴ 50

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flowcore flow cytometry flowdensity hyperlog transformation

updated 5.1 years ago by Jiang, Mike ★ 1.3k • written 5.1 years ago by Joseph.Hanson • 0

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flowcore flow cytometry transformation

updated 5.8 years ago by SamGG ▴ 300 • written 5.8 years ago by Andrew Box ▴ 10

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Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k

In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…

Comment: T.fit function of maSigPro returns error message by hanna.g • 0

Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …

Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k

1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…

Comment: Doubts regarding Pathview by loyedbend2811 • 0

I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …

Comment: ukb Chromosomal position information was converted into SNPS by wenbo • 0

Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs

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Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

Comment: comparing contrasts in edger/lima using makeContrasts function

Answer: comparing contrasts in edger/lima using makeContrasts function

Answer: Differential expression analysis with only FPKM matrix available from total newb

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