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2
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0
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3.2k
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Answer: Answer: Error in downloading GEO Supplementary files
2.7 years ago tcalvo ▴ 100
0
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0
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1.5k
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Comment: Comment: Complex contrasts in limma
2.8 years ago tcalvo ▴ 100
2
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2
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1.5k
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Complex contrasts in limma
RNASeq limma DifferentialExpression
2.8 years ago tcalvo ▴ 100
1
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0
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953
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Answer: Answer: Description of the headers obtained from the Eligos2 output
2.8 years ago tcalvo ▴ 100
0
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0
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2.4k
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Comment: Comment: Three way-interaction on voom (limma) data, including a factor with > 2 levels
2.8 years ago tcalvo ▴ 100
0
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0
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1.4k
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Comment: Comment: error in installation of 'org.Hs.eg.db'
4.0 years ago tcalvo ▴ 100
0
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0
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3.4k
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Comment: Comment: Error in lfcShrink
4.1 years ago tcalvo ▴ 100
2
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3
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2.3k
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Normalization for within-sample gene correlation
edgeR Normalization DESeq2 tpm RNASeq
updated 4.1 years ago by 52k • written 4.1 years ago by ▴ 100
0
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1
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2.3k
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Comment: Comment: Normalization for within-sample gene correlation
4.1 years ago tcalvo ▴ 100
1
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1
reply
3.4k
views
Answer: Answer: Error in lfcShrink
4.1 years ago tcalvo ▴ 100
0
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1
reply
1.1k
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Comment: C: Is it allowed to fit two models to make between and within subjects comparisons
5.9 years ago tcalvo ▴ 100
0
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3
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1.1k
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Is it allowed to fit two models to make between and within subjects comparisons separately?
rnaseq limma edger deseq2 random effects
5.9 years ago tcalvo ▴ 100
0
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0
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2.9k
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Comment: C: limma-voom duplicateCorrelation once or twice, difference?
6.1 years ago tcalvo ▴ 100
0
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0
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2.9k
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Comment: C: limma-voom duplicateCorrelation once or twice, difference?
6.1 years ago tcalvo ▴ 100
10
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5
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2.9k
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limma-voom duplicateCorrelation once or twice, difference?
limma-voom duplicatecorrelation random effects
updated 6.1 years ago by 52k • written 6.1 years ago by ▴ 100
0
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0
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1.8k
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Comment: C: RankProd crashing - stability issues?
7.0 years ago tcalvo ▴ 100
2
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3
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3.5k
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DESEq2 p-values weird distribution under the H0 and fdrtool
rnaseq deseq2 fdrtool differential gene expression
7.3 years ago tcalvo ▴ 100
0
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0
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3.5k
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Comment: C: DESEq2 p-values weird distribution under the H0 and fdrtool
7.3 years ago tcalvo ▴ 100
11
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3
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11k
views
Volcanoplot with limma - RAW P-values or Adj.P-Values
volcanoplot limma fdr
7.4 years ago • updated 4.1 years ago tcalvo ▴ 100
0
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0
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11k
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Comment: C: Volcanoplot with limma - RAW P-values or Adj.P-Values
7.4 years ago • updated 4.1 years ago tcalvo ▴ 100
0
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1
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2.4k
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Answer: A: biomaRt Ensembl ID query returns NA in 'ensembl_gene_id', 'ensembl_transcript_id
7.4 years ago tcalvo ▴ 100
0
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1
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3.4k
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Answer: A: RSQLite reverse dependencies
7.4 years ago tcalvo ▴ 100
1
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0
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1.7k
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Answer: A: Getting gene annotation for a GEO dataset
7.4 years ago tcalvo ▴ 100
2
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1
reply
1.1k
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Plotting Gene Expression Data From Multiple Batches
batch effect microarray plot
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by ▴ 100
2
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2
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5.1k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2 clusterprofiler visualization gseGo
7.7 years ago • updated 4.1 years ago tcalvo ▴ 100
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