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Showing :
questions
2
votes
2
replies
1.5k
views
Complex contrasts in limma
RNASeq
limma
DifferentialExpression
2.9 years ago
tcalvo
▴ 100
2
votes
3
replies
2.3k
views
Normalization for within-sample gene correlation
edgeR
Normalization
DESeq2
tpm
RNASeq
updated 4.2 years ago by
Gordon Smyth
52k • written 4.2 years ago by
tcalvo
▴ 100
0
votes
3
replies
1.1k
views
Is it allowed to fit two models to make between and within subjects comparisons separately?
rnaseq
limma
edger
deseq2
random effects
6.0 years ago
tcalvo
▴ 100
10
votes
5
replies
3.0k
views
limma-voom duplicateCorrelation once or twice, difference?
limma-voom
duplicatecorrelation
random effects
updated 6.2 years ago by
Gordon Smyth
52k • written 6.2 years ago by
tcalvo
▴ 100
2
votes
3
replies
3.5k
views
DESEq2 p-values weird distribution under the H0 and fdrtool
rnaseq
deseq2
fdrtool
differential gene expression
7.4 years ago
tcalvo
▴ 100
11
votes
3
replies
11k
views
Volcanoplot with limma - RAW P-values or Adj.P-Values
volcanoplot
limma
fdr
7.5 years ago • updated 4.2 years ago
tcalvo
▴ 100
2
votes
1
reply
1.1k
views
Plotting Gene Expression Data From Multiple Batches
batch effect
microarray
plot
updated 7.5 years ago by
Jenny Drnevich
★ 2.0k • written 7.5 years ago by
tcalvo
▴ 100
2
votes
2
replies
5.1k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2
clusterprofiler
visualization
gseGo
7.8 years ago • updated 4.2 years ago
tcalvo
▴ 100
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