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BSgenome packages for ce10 and panTro3 (was Re: BSgenome.Celegans.UCSC.cd10 for WS220)
Cancer
BSgenome
BSgenome
Cancer
BSgenome
BSgenome
updated 12.0 years ago by
Julie Zhu
★ 4.3k • written 12.0 years ago by
Hervé Pagès
16k
0
votes
2
replies
949
views
question about BSgenome and C.pombe genome, absent in USCS
Cancer
BSgenome
BSgenome
Cancer
BSgenome
BSgenome
updated 12.0 years ago by
Henry Paik
▴ 30 • written 12.0 years ago by
Hervé Pagès
16k
0
votes
0
replies
776
views
oligonucleotideTransitions from Biostrings package
Cancer
Biostrings
Cancer
Biostrings
12.1 years ago
Hervé Pagès
16k
0
votes
6
replies
1.5k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer
Organism
biomaRt
GenomicFeatures
genomes
Cancer
Organism
biomaRt
GenomicFeatures
updated 12.1 years ago by
Rhoda Kinsella
▴ 660 • written 12.1 years ago by
Hervé Pagès
16k
0
votes
3
replies
1.4k
views
homopolymer gap extension penalty in Biostrings
Sequencing
Alignment
GO
Cancer
Sequencing
Alignment
GO
Cancer
updated 12.2 years ago by
Noah Hoffman
▴ 10 • written 12.2 years ago by
Hervé Pagès
16k
0
votes
0
replies
821
views
making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation
GO
Cancer
BSgenome
Biostrings
BSgenome
rtracklayer
GenomicFeatures
goseq
GO
12.2 years ago
Hervé Pagès
16k
0
votes
0
replies
746
views
Genomicfeatures chromosome names matching
Cancer
TranscriptDb
convert
Cancer
TranscriptDb
convert
12.2 years ago
Hervé Pagès
16k
0
votes
0
replies
651
views
narrow on GappedAlignments fails with error
Cancer
GenomicRanges
Cancer
GenomicRanges
12.2 years ago
Hervé Pagès
16k
0
votes
2
replies
1.6k
views
shift function (GenomicRanges, IRanges), issue with negative start values and circular DNA
Cancer
Cancer
updated 12.3 years ago by
Ivanek, Robert
▴ 100 • written 12.3 years ago by
Hervé Pagès
16k
0
votes
0
replies
672
views
BSgenome package for sacCer3
Cancer
BSgenome
BSgenome
Cancer
BSgenome
BSgenome
12.6 years ago
Hervé Pagès
16k
0
votes
1
reply
1.6k
views
[Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values
Cancer
Biostrings
GLAD
Cancer
Biostrings
GLAD
updated 12.6 years ago by
Michael Lawrence
★ 11k • written 12.6 years ago by
Hervé Pagès
16k
0
votes
3
replies
1.1k
views
[Bioc-sig-seq] first remove low quality or adaptor
Cancer
Biostrings
convert
Cancer
Biostrings
convert
updated 12.6 years ago by
wang peter
★ 2.0k • written 12.6 years ago by
Hervé Pagès
16k
0
votes
0
replies
3.0k
views
unique, duplicated, order, etc... on a GRanges object
Cancer
GenomicRanges
Cancer
GenomicRanges
12.7 years ago
Hervé Pagès
16k
0
votes
0
replies
798
views
align microRNA with custom mRNA sequences
Alignment
Cancer
Biostrings
microRNA
Alignment
Cancer
Biostrings
microRNA
12.7 years ago
Hervé Pagès
16k
0
votes
2
replies
1.1k
views
Fwd: Probe matching using vmatchPDict
Cancer
probe
Cancer
probe
updated 12.8 years ago by
Ian Henry
▴ 50 • written 12.8 years ago by
Hervé Pagès
16k
0
votes
1
reply
738
views
IRanges: Request for a "step" argument in runsum
Cancer
PROcess
IRanges
genomes
Cancer
PROcess
IRanges
genomes
updated 12.9 years ago by
Michael Lawrence
★ 11k • written 12.9 years ago by
Hervé Pagès
16k
0
votes
2
replies
1.0k
views
IRanges package: findOverlaps on blobs
Cancer
convert
IRanges
Cancer
convert
IRanges
12.9 years ago
Hervé Pagès
16k
0
votes
0
replies
779
views
BSgenome package - danRer7 genome assembly
Cancer
BSgenome
BSgenome
Cancer
BSgenome
BSgenome
12.9 years ago
Hervé Pagès
16k
0
votes
7
replies
1.7k
views
Mapping genomic coordinates to transcript coordinates? (revived)
Biostrings
GenomicFeatures
Biostrings
GenomicFeatures
updated 13.1 years ago by
Michael Lawrence
★ 11k • written 13.2 years ago by
Hervé Pagès
16k
0
votes
9
replies
1.9k
views
Mapping microarray probes to the genome using findOverlaps
Microarray
Alignment
Annotation
zebrafish
probe
Biostrings
GenomicFeatures
Microarray
updated 13.2 years ago by
Sean Davis
21k • written 13.2 years ago by
Hervé Pagès
16k
0
votes
0
replies
752
views
Where can i find/install package -"BSgenome.Mmusculus.UCSC.mm9" in BSgenome
Cancer
Cancer
13.2 years ago
Hervé Pagès
16k
0
votes
0
replies
526
views
BSgenome package for Stickleback
Cancer
BSgenome
BSgenome
Cancer
BSgenome
BSgenome
13.3 years ago
Hervé Pagès
16k
0
votes
0
replies
477
views
IRanges
Cancer
IRanges
Cancer
IRanges
13.4 years ago
Hervé Pagès
16k
0
votes
0
replies
615
views
Mac binaries for R 2.12 fixed
Cancer
Cancer
13.5 years ago
Hervé Pagès
16k
0
votes
0
replies
608
views
Deadline for submitting a package for BioC 2.7
Cancer
Cancer
13.6 years ago
Hervé Pagès
16k
0
votes
1
reply
957
views
TranscriptDb and genomicranges questions
Cancer
TranscriptDb
Category
IRanges
GenomicRanges
Cancer
TranscriptDb
Category
IRanges
13.7 years ago
Hervé Pagès
16k
0
votes
0
replies
526
views
problem using Alternative CDF environments, CdfEnvAffy
Cancer
Cancer
13.8 years ago
Hervé Pagès
16k
0
votes
1
reply
1.2k
views
question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
PING
SANTA
Cancer
rtracklayer
GenomicRanges
PING
SANTA
updated 13.9 years ago by
Ping Ma
▴ 10 • written 13.9 years ago by
Hervé Pagès
16k
0
votes
0
replies
633
views
11 more packages available on 64-bit Windows
Cancer
Cancer
13.9 years ago
Hervé Pagès
16k
0
votes
2
replies
1.3k
views
New SNPlocs data package for Human (dbSNP BUILD 131)
Cancer
BSgenome
SNPlocs
BSgenome
Cancer
BSgenome
SNPlocs
BSgenome
14.0 years ago
Hervé Pagès
16k
0
votes
0
replies
548
views
question about forgeBSgenomeDataPkg function
Cancer
BSgenome
BSgenome
IRanges
Cancer
BSgenome
BSgenome
IRanges
14.2 years ago
Hervé Pagès
16k
0
votes
0
replies
698
views
A question about org.Hs.egMAPCOUNTS
GO
Cancer
GO
Cancer
14.2 years ago
Hervé Pagès
16k
0
votes
1
reply
617
views
bioconductor.org will be down on Friday 18 noon-1pm Seattle time
Cancer
Cancer
14.6 years ago
Hervé Pagès
16k
0
votes
0
replies
808
views
Bsgenome Zv7 sequence data
Cancer
Danio rerio
zebrafish
Cancer
Danio rerio
zebrafish
14.8 years ago
Hervé Pagès
16k
0
votes
0
replies
736
views
[Fwd: [Genome-announce] Note on human mitochondrial sequence in hg19]
Cancer
BSgenome
BSgenome
Cancer
BSgenome
BSgenome
14.8 years ago
Hervé Pagès
16k
0
votes
0
replies
595
views
BSGenomeForge
Cancer
BSgenome
BSgenome
Cancer
BSgenome
BSgenome
14.8 years ago
Hervé Pagès
16k
0
votes
0
replies
606
views
[Bioc-sig-seq] Error in assign while calling the vmatchPattern function
Cancer
Cancer
14.8 years ago
Hervé Pagès
16k
0
votes
11
replies
2.9k
views
Venn Diagram
Cancer
ABarray
Cancer
ABarray
updated 14.8 years ago by
SimonNoël
▴ 450 • written 14.8 years ago by
Hervé Pagès
16k
0
votes
1
reply
736
views
Error in assign while calling the vmatchPattern function
Cancer
BSgenome
BSgenome
Cancer
BSgenome
BSgenome
updated 14.9 years ago by
Henrik Bengtsson
★ 2.4k • written 14.9 years ago by
Hervé Pagès
16k
0
votes
0
replies
894
views
Bioconductor package to map probe set ids from one chip to another chip
Annotation
GO
Cancer
hgu133a
hgu95av2
probe
Biostrings
Annotation
GO
Cancer
hgu133a
15.0 years ago
Hervé Pagès
16k
0
votes
0
replies
517
views
script line to multiply a vector by another vector or matrix
Cancer
Cancer
15.1 years ago
Hervé Pagès
16k
0
votes
1
reply
640
views
matchPdict error
Cancer
BSgenome
BSgenome
Cancer
BSgenome
BSgenome
15.2 years ago
Hervé Pagès
16k
0
votes
0
replies
1.4k
views
About the bioconductor package SNPlocs.Hsapiens.dbSNP.20071016.
SNP
Cancer
SNPlocs
SNP
Cancer
SNPlocs
15.2 years ago
Hervé Pagès
16k
0
votes
0
replies
1.7k
views
getSeq human genomic sequences
Annotation
Cancer
BSgenome
PROcess
GLAD
BSgenome
IRanges
Annotation
Cancer
BSgenome
GLAD
15.3 years ago
Hervé Pagès
16k
0
votes
2
replies
1.8k
views
[R] BioC 2.3 standard installation
Cancer
preprocessCore
Cancer
preprocessCore
15.4 years ago
Hervé Pagès
16k
0
votes
2
replies
589
views
Download numbers
Cancer
Cancer
updated 15.4 years ago by
Diego Diez
▴ 760 • written 15.4 years ago by
Hervé Pagès
16k
0
votes
1
reply
875
views
New bosTau4 genome
BSgenome
BSgenome
genomes
BSgenome
BSgenome
genomes
updated 15.5 years ago by
João Fadista
▴ 500 • written 15.5 years ago by
Hervé Pagès
16k
0
votes
2
replies
824
views
SNPs data analysis
Normalization
beadarray
Normalization
beadarray
updated 15.7 years ago by
Richard Pearson
▴ 390 • written 15.7 years ago by
Hervé Pagès
16k
0
votes
1
reply
2.2k
views
RSQLite installation question
updated 15.7 years ago by
Kasper Daniel Hansen
★ 6.5k • written 15.7 years ago by
Hervé Pagès
16k
0
votes
1
reply
555
views
bioconductor.org down tomorrow March 11 between noon and 4pm (Seattle time)
16.2 years ago
Hervé Pagès
16k
107 results • Page
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