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BSgenome packages for ce10 and panTro3 (was Re: BSgenome.Celegans.UCSC.cd10 for WS220)
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 12.0 years ago by ★ 4.3k • written 12.0 years ago by 16k
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2
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949
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question about BSgenome and C.pombe genome, absent in USCS
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 12.0 years ago by ▴ 30 • written 12.0 years ago by 16k
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0
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776
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oligonucleotideTransitions from Biostrings package
Cancer Biostrings Cancer Biostrings
12.1 years ago Hervé Pagès 16k
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6
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1.5k
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[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt GenomicFeatures genomes Cancer Organism biomaRt GenomicFeatures
updated 12.1 years ago by ▴ 660 • written 12.1 years ago by 16k
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3
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1.4k
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homopolymer gap extension penalty in Biostrings
Sequencing Alignment GO Cancer Sequencing Alignment GO Cancer
updated 12.2 years ago by ▴ 10 • written 12.2 years ago by 16k
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0
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821
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making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer BSgenome Biostrings BSgenome rtracklayer GenomicFeatures goseq GO
12.2 years ago Hervé Pagès 16k
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0
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745
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Genomicfeatures chromosome names matching
Cancer TranscriptDb convert Cancer TranscriptDb convert
12.2 years ago Hervé Pagès 16k
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0
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651
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narrow on GappedAlignments fails with error
Cancer GenomicRanges Cancer GenomicRanges
12.2 years ago Hervé Pagès 16k
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2
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1.6k
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shift function (GenomicRanges, IRanges), issue with negative start values and circular DNA
Cancer Cancer
updated 12.3 years ago by ▴ 100 • written 12.3 years ago by 16k
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672
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BSgenome package for sacCer3
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
12.6 years ago Hervé Pagès 16k
0
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1
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1.6k
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[Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values
Cancer Biostrings GLAD Cancer Biostrings GLAD
updated 12.6 years ago by ★ 11k • written 12.6 years ago by 16k
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3
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1.1k
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[Bioc-sig-seq] first remove low quality or adaptor
Cancer Biostrings convert Cancer Biostrings convert
updated 12.6 years ago by ★ 2.0k • written 12.6 years ago by 16k
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0
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3.0k
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unique, duplicated, order, etc... on a GRanges object
Cancer GenomicRanges Cancer GenomicRanges
12.7 years ago Hervé Pagès 16k
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0
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798
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align microRNA with custom mRNA sequences
Alignment Cancer Biostrings microRNA Alignment Cancer Biostrings microRNA
12.7 years ago Hervé Pagès 16k
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2
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1.1k
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Fwd: Probe matching using vmatchPDict
Cancer probe Cancer probe
updated 12.8 years ago by ▴ 50 • written 12.8 years ago by 16k
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1
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737
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IRanges: Request for a "step" argument in runsum
Cancer PROcess IRanges genomes Cancer PROcess IRanges genomes
updated 12.8 years ago by ★ 11k • written 12.9 years ago by 16k
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2
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1.0k
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IRanges package: findOverlaps on blobs
Cancer convert IRanges Cancer convert IRanges
12.9 years ago Hervé Pagès 16k
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0
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779
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BSgenome package - danRer7 genome assembly
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
12.9 years ago Hervé Pagès 16k
0
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7
replies
1.7k
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Mapping genomic coordinates to transcript coordinates? (revived)
Biostrings GenomicFeatures Biostrings GenomicFeatures
updated 13.1 years ago by ★ 11k • written 13.2 years ago by 16k
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9
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1.9k
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Mapping microarray probes to the genome using findOverlaps
Microarray Alignment Annotation zebrafish probe Biostrings GenomicFeatures Microarray
updated 13.2 years ago by 21k • written 13.2 years ago by 16k
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0
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752
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Where can i find/install package -"BSgenome.Mmusculus.UCSC.mm9" in BSgenome
Cancer Cancer
13.2 years ago Hervé Pagès 16k
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0
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526
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BSgenome package for Stickleback
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
13.3 years ago Hervé Pagès 16k
0
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0
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477
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IRanges
Cancer IRanges Cancer IRanges
13.4 years ago Hervé Pagès 16k
0
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0
replies
614
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Mac binaries for R 2.12 fixed
Cancer Cancer
13.5 years ago Hervé Pagès 16k
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0
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608
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Deadline for submitting a package for BioC 2.7
Cancer Cancer
13.6 years ago Hervé Pagès 16k
0
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1
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957
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TranscriptDb and genomicranges questions
Cancer TranscriptDb Category IRanges GenomicRanges Cancer TranscriptDb Category IRanges
13.7 years ago Hervé Pagès 16k
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0
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526
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problem using Alternative CDF environments, CdfEnvAffy
Cancer Cancer
13.8 years ago Hervé Pagès 16k
0
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1
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1.2k
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question on makeTranscriptDbFromUCSC
Cancer rtracklayer GenomicRanges PING SANTA Cancer rtracklayer GenomicRanges PING SANTA
updated 13.9 years ago by ▴ 10 • written 13.9 years ago by 16k
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0
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632
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11 more packages available on 64-bit Windows
Cancer Cancer
13.9 years ago Hervé Pagès 16k
0
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2
replies
1.3k
views
New SNPlocs data package for Human (dbSNP BUILD 131)
Cancer BSgenome SNPlocs BSgenome Cancer BSgenome SNPlocs BSgenome
14.0 years ago Hervé Pagès 16k
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0
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547
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question about forgeBSgenomeDataPkg function
Cancer BSgenome BSgenome IRanges Cancer BSgenome BSgenome IRanges
14.2 years ago Hervé Pagès 16k
0
votes
0
replies
698
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A question about org.Hs.egMAPCOUNTS
GO Cancer GO Cancer
14.2 years ago Hervé Pagès 16k
0
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1
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617
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bioconductor.org will be down on Friday 18 noon-1pm Seattle time
Cancer Cancer
14.6 years ago Hervé Pagès 16k
0
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0
replies
808
views
Bsgenome Zv7 sequence data
Cancer Danio rerio zebrafish Cancer Danio rerio zebrafish
14.8 years ago Hervé Pagès 16k
0
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0
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735
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[Fwd: [Genome-announce] Note on human mitochondrial sequence in hg19]
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
14.8 years ago Hervé Pagès 16k
0
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0
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595
views
BSGenomeForge
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
14.8 years ago Hervé Pagès 16k
0
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0
replies
606
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[Bioc-sig-seq] Error in assign while calling the vmatchPattern function
Cancer Cancer
14.8 years ago Hervé Pagès 16k
0
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11
replies
2.9k
views
Venn Diagram
Cancer ABarray Cancer ABarray
updated 14.8 years ago by ▴ 450 • written 14.8 years ago by 16k
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1
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735
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Error in assign while calling the vmatchPattern function
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 14.9 years ago by ★ 2.4k • written 14.9 years ago by 16k
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0
replies
894
views
Bioconductor package to map probe set ids from one chip to another chip
Annotation GO Cancer hgu133a hgu95av2 probe Biostrings Annotation GO Cancer hgu133a
15.0 years ago Hervé Pagès 16k
0
votes
0
replies
517
views
script line to multiply a vector by another vector or matrix
Cancer Cancer
15.1 years ago Hervé Pagès 16k
0
votes
1
reply
638
views
matchPdict error
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
15.2 years ago Hervé Pagès 16k
0
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0
replies
1.4k
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About the bioconductor package SNPlocs.Hsapiens.dbSNP.20071016.
SNP Cancer SNPlocs SNP Cancer SNPlocs
15.2 years ago Hervé Pagès 16k
0
votes
0
replies
1.7k
views
getSeq human genomic sequences
Annotation Cancer BSgenome PROcess GLAD BSgenome IRanges Annotation Cancer BSgenome GLAD
15.3 years ago Hervé Pagès 16k
0
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2
replies
1.8k
views
[R] BioC 2.3 standard installation
Cancer preprocessCore Cancer preprocessCore
15.4 years ago Hervé Pagès 16k
0
votes
2
replies
589
views
Download numbers
Cancer Cancer
updated 15.4 years ago by ▴ 760 • written 15.4 years ago by 16k
0
votes
1
reply
875
views
New bosTau4 genome
BSgenome BSgenome genomes BSgenome BSgenome genomes
updated 15.5 years ago by ▴ 500 • written 15.5 years ago by 16k
0
votes
2
replies
824
views
SNPs data analysis
Normalization beadarray Normalization beadarray
updated 15.7 years ago by ▴ 390 • written 15.7 years ago by 16k
0
votes
1
reply
2.2k
views
RSQLite installation question
updated 15.7 years ago by ★ 6.5k • written 15.7 years ago by 16k
0
votes
1
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555
views
bioconductor.org down tomorrow March 11 between noon and 4pm (Seattle time)
16.2 years ago Hervé Pagès 16k
107 results • Page 2 of 3
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