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Error in seqVCF2GDS FORMAT ID 'AD' should have 1 value(s), but receives 2.
seqVCF2GDS
updated 5.4 years ago by
qliu7
• 0 • written 5.4 years ago by
cav3gh
• 0
1
vote
1
reply
1.7k
views
VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate
VCF
updated 5.4 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.4 years ago by
cav3gh
• 0
0
votes
1
reply
4.0k
views
SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate
fst
updated 5.9 years ago by
zhengx
▴ 30 • written 5.9 years ago by
cav3gh
• 0
0
votes
2
replies
1.5k
views
Seq Array converting VCF to GDS using seqVCF2GDS, unable to find file problems with vcf.fn
seqarray
updated 6.1 years ago by
Stephanie M. Gogarten
▴ 870 • written 6.1 years ago by
cav3gh
• 0
0
votes
1
reply
971
views
Defining populations in a msaClustalOmega alignment
msa
6.3 years ago
cav3gh
• 0
2
votes
2
replies
3.8k
views
How to get msa output in fasta format
msa
msaprettyprint()
updated 6.3 years ago by
UBod
▴ 290 • written 6.3 years ago by
cav3gh
• 0
0
votes
0
replies
874
views
msa output formats for use down stream to create phylogenetic trees
R
bioconductor
phylogenetic
6.4 years ago
cav3gh
• 0
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