Biostar Snprelate

Showing : snprelate • reset

votes

229

views

SNPRelate

updated 9 months ago by xiuwen.zheng • 0 • written 9 months ago by alyssahz • 0

votes

202

views

snprelate

updated 12 months ago by James W. MacDonald 58k • written 12 months ago by zen • 0

vote

236

views

SNPRelate

updated 2.3 years ago by zhengx ▴ 30 • written 2.3 years ago by grp2009 • 0

votes

280

views

SNPRelate

updated 2.4 years ago by zhengx ▴ 30 • written 2.4 years ago by serpalma.v ▴ 60

vote

435

views

SNPRelate VCF

updated 2.5 years ago by Stephanie M. Gogarten ▴ 800 • written 2.5 years ago by cav3gh • 0

vote

308

views

SNPRelate PCA

updated 2.5 years ago by Stephanie M. Gogarten ▴ 800 • written 2.5 years ago by serpalma.v ▴ 60

votes

1.4k

views

snprelate fst

updated 2.9 years ago by zhengx ▴ 30 • written 2.9 years ago by cav3gh • 0

votes

386

views

genesis snprelate

3.0 years ago Stephanie M. Gogarten ▴ 800

votes

520

views

gds SNPRelate BiocParallel

updated 3.4 years ago by zhengx ▴ 30 • written 3.4 years ago by Vinicius Henrique da Silva ▴ 40

votes

replies

767

views

snprelate vcf gds

updated 3.5 years ago by zhengx ▴ 30 • written 3.5 years ago by annat22 • 0

vote

replies

807

views

snprelate Tutorial

updated 4.3 years ago by zhengx ▴ 30 • written 4.3 years ago by AR3513 • 0

votes

907

views

SNPRelate R

updated 5.3 years ago by zhengx ▴ 30 • written 5.3 years ago by rfriedman22 • 0

votes

replies

868

views

snprelate GWASTools

updated 5.3 years ago by Adrienne Stilp ▴ 30 • written 5.3 years ago by Vinicius Henrique da Silva ▴ 40

votes

replies

5.0k

views

mgcv snprelate

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by mail2vignesh1985 • 0

votes

replies

1.5k

views

snprelate

updated 5.8 years ago by zhengx ▴ 30 • written 5.8 years ago by blackgore ▴ 10

votes

replies

573

views

snprelate RADseq Stacks

5.9 years ago clive.darwell • 0

votes

replies

1.3k

views

Organism GWASTools Organism GWASTools SNPRelate

8.5 years ago Stephanie M. Gogarten ▴ 800

17 results • Page 1 of 1

Recent ...

Replies

Comment: Understanding output of Negative Binomial in DESeq2 by synat.keam • 0

Thank, Senior. sorry for cross posting as I was thinking in case I got different opinion, but the explanation was clear from Biostar. thank…

Comment: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

Cross posted to Biostars https://www.biostars.org/p/9490039/

Answer: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

The difference has nothing to do with limma or voom. On the right you applied TMM library size normalization. On the left you did no librar…

Answer: error: cannot execute 'f951': execvp: No such file or directory when downloading by Michael Love 34k

The answer is going to depend on how you installed R and Bioconductor, what OS and system you are on.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by James W. MacDonald 58k

The error you get from `ComBat` comes from the test ``` qr(design)$rank < ncol(design) ``` And inside of `nonEstimable` is, as one might …

Votes

Answer: Effect size using likelihood ratio test in DESeq2

Comment: ggtree install

Answer: Warning messages on Apple M1 BigSur

Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2

Answer: Log fold change interpretation of time series with Wald test

Awards • All

Popular Question to Hans-Ulrich Klein ▴ 330