Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
snprelate
•
reset
0
votes
0
replies
475
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP
ExomeSeqData
snapcount
SNAData
SNPRelate
18 months ago
m610110001
• 0
0
votes
2
replies
930
views
How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 2.1 years ago by
Stephanie M. Gogarten
▴ 870 • written 2.1 years ago by
MatthaeusCaesar
• 0
0
votes
1
reply
1.1k
views
SNP annotation
SNPRelate
SNP
GWASTools
Annotation
GWASdata
updated 2.3 years ago by
Stephanie M. Gogarten
▴ 870 • written 2.4 years ago by
Adrián
• 0
0
votes
0
replies
795
views
SNPRelate handling of missing genotypes
SNPRelate
2.3 years ago
serpalma.v
▴ 60
0
votes
0
replies
686
views
#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate
gdsfmt
SeqSQC
2.5 years ago
Bhargavi
• 0
0
votes
1
reply
916
views
error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 3.4 years ago by
xiuwen.zheng
• 0 • written 3.4 years ago by
alyssahz
• 0
3
votes
1
reply
1.0k
views
How to add colors to the PCA made using SNPRelate
snprelate
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
zen
• 0
1
vote
1
reply
806
views
What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 4.9 years ago by
zhengx
▴ 30 • written 4.9 years ago by
grp2009
• 0
0
votes
1
reply
857
views
Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 4.9 years ago by
zhengx
▴ 30 • written 5.0 years ago by
serpalma.v
▴ 60
1
vote
1
reply
1.5k
views
VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate
VCF
updated 5.1 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.1 years ago by
cav3gh
• 0
1
vote
1
reply
975
views
PCA axis description SNPRelate
SNPRelate
PCA
updated 5.1 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.1 years ago by
serpalma.v
▴ 60
0
votes
1
reply
3.7k
views
SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate
fst
updated 5.5 years ago by
zhengx
▴ 30 • written 5.5 years ago by
cav3gh
• 0
0
votes
1
reply
900
views
Using previously calculated PCs in GENESIS
genesis
snprelate
5.6 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.3k
views
Write gds in parallel
gds
SNPRelate
BiocParallel
updated 6.0 years ago by
zhengx
▴ 30 • written 6.0 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
2
replies
1.5k
views
Error converting vcf to gds
snprelate
vcf
gds
updated 6.1 years ago by
zhengx
▴ 30 • written 6.1 years ago by
annat22
• 0
1
vote
2
replies
1.6k
views
Cannot read plink files correctly
snprelate
Tutorial
updated 6.9 years ago by
zhengx
▴ 30 • written 6.9 years ago by
AR3513
• 0
0
votes
1
reply
1.5k
views
SNPRelate Dendrogram Point Colors and Shapes
SNPRelate
R
updated 7.9 years ago by
zhengx
▴ 30 • written 7.9 years ago by
rfriedman22
• 0
3
votes
2
replies
1.7k
views
Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate
GWASTools
updated 7.9 years ago by
Adrienne Stilp
▴ 30 • written 7.9 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
9
replies
6.2k
views
unable to update mgcv package
mgcv
snprelate
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
mail2vignesh1985
• 0
0
votes
4
replies
2.4k
views
NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 8.4 years ago by
zhengx
▴ 30 • written 8.4 years ago by
blackgore
▴ 10
0
votes
0
replies
930
views
RADseq chromosomes unknown
snprelate
RADseq
Stacks
8.4 years ago
clive.darwell
• 0
0
votes
0
replies
1.9k
views
GWASTools
Organism
GWASTools
Organism
GWASTools
SNPRelate
11.1 years ago
Stephanie M. Gogarten
▴ 870
22 results • Page
1 of 1
Recent ...
Replies
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards
• All
Scholar
to
James W. MacDonald
65k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Chris
• 0
Supporter
to
Jonathan
▴ 10
Locations
• All
India,
1 minute ago
Germany,
10 minutes ago
France,
13 minutes ago
WEHI, Melbourne, Australia,
13 minutes ago
Germany,
20 minutes ago
Traffic: 960 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6