Showing : snprelate • reset
0
votes
0
replies
986
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
3.3 years ago m610110001 • 0
0
votes
2
replies
1.6k
views
How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 4.0 years ago by ▴ 890 • written 4.0 years ago by • 0
0
votes
1
reply
2.0k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 4.1 years ago by ▴ 890 • written 4.2 years ago by • 0
0
votes
0
replies
1.5k
views
SNPRelate handling of missing genotypes
SNPRelate
4.1 years ago serpalma.v ▴ 60
0
votes
0
replies
1.2k
views
#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate gdsfmt SeqSQC
4.4 years ago Bhargavi • 0
0
votes
1
reply
1.5k
views
error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 5.2 years ago by • 0 • written 5.2 years ago by • 0
3
votes
1
reply
1.6k
views
How to add colors to the PCA made using SNPRelate
snprelate
updated 5.4 years ago by 68k • written 5.4 years ago by • 0
1
vote
1
reply
1.3k
views
What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 6.7 years ago by ▴ 30 • written 6.7 years ago by • 0
0
votes
1
reply
1.4k
views
Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 6.8 years ago by ▴ 30 • written 6.8 years ago by ▴ 60
1
vote
1
reply
2.3k
views
VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate VCF
updated 6.9 years ago by ▴ 890 • written 6.9 years ago by • 0
1
vote
1
reply
1.5k
views
PCA axis description SNPRelate
SNPRelate PCA
updated 6.9 years ago by ▴ 890 • written 6.9 years ago by ▴ 60
0
votes
1
reply
4.9k
views
SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate fst
updated 7.4 years ago by ▴ 30 • written 7.4 years ago by • 0
0
votes
1
reply
1.3k
views
Using previously calculated PCs in GENESIS
genesis snprelate
7.4 years ago Stephanie M. Gogarten ▴ 890
0
votes
1
reply
1.9k
views
Write gds in parallel
gds SNPRelate BiocParallel
updated 7.8 years ago by ▴ 30 • written 7.8 years ago by ▴ 40
0
votes
2
replies
2.3k
views
Error converting vcf to gds
snprelate vcf gds
updated 7.9 years ago by ▴ 30 • written 7.9 years ago by • 0
1
vote
2
replies
2.3k
views
Cannot read plink files correctly
snprelate Tutorial
updated 8.7 years ago by ▴ 30 • written 8.7 years ago by • 0
0
votes
1
reply
2.1k
views
SNPRelate Dendrogram Point Colors and Shapes
SNPRelate R
updated 9.7 years ago by ▴ 30 • written 9.7 years ago by • 0
3
votes
2
replies
2.4k
views
Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate GWASTools
updated 9.8 years ago by ▴ 30 • written 9.8 years ago by ▴ 40
0
votes
9
replies
7.6k
views
unable to update mgcv package
mgcv snprelate
updated 10.2 years ago by 25k • written 10.2 years ago by • 0
0
votes
4
replies
3.2k
views
NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 10.3 years ago by ▴ 30 • written 10.3 years ago by ▴ 10
0
votes
0
replies
1.3k
views
RADseq chromosomes unknown
snprelate RADseq Stacks
10.3 years ago clive.darwell • 0
0
votes
0
replies
2.4k
views
GWASTools
Organism GWASTools Organism GWASTools SNPRelate
12.9 years ago Stephanie M. Gogarten ▴ 890
22 results • Page 1 of 1
Recent ...
Replies
Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
Awards • All
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to chirag.parsania ▴ 10
Popular Question to Michael Love 43k
Popular Question to Dan Tenenbaum ★ 8.2k
Scholar to Gordon Smyth 53k
Locations • All
United States, 12 minutes ago
Melbourne, Australia, 47 minutes ago
United States, 1 hour ago
United States, 1 hour ago
United States, 1 hour ago
Traffic: 1171 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6