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promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
TxDb.Hsapiens.UCSC.hg38.knownGene
updated 10 months ago by 68k • written 11 months ago by ▴ 20
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Comment: Comment: how can I do gene differential analysis on data after vst
2.7 years ago linouhao ▴ 20
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2.8k
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Comment: Comment: how can I do gene differential analysis on data after vst
2.7 years ago linouhao ▴ 20
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2
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2.8k
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Comment: Comment: how can I do gene differential analysis on data after vst
2.7 years ago linouhao ▴ 20
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0
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3.1k
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Comment: Comment: can negative value microarray matrix data analysed by limma directly
2.7 years ago linouhao ▴ 20
0
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1
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2.8k
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Comment: Comment: how can I do gene differential analysis on data after vst
2.7 years ago linouhao ▴ 20
0
votes
1
reply
2.8k
views
Comment: Comment: how can I do gene differential analysis on data after vst
2.7 years ago linouhao ▴ 20
0
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1
reply
2.8k
views
Comment: Comment: how can I do gene differential analysis on data after vst
2.7 years ago linouhao ▴ 20
1
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6
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3.1k
views
can negative value microarray matrix data analysed by limma directly
limma microarray normalization
updated 2.3 years ago by 53k • written 5.2 years ago by ▴ 20
5
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15
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2.8k
views
how can I do gene differential analysis on data after vst
DESeq2
written 2.7 years ago by ▴ 20
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0
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2.8k
views
Comment: Comment: how can I do gene differential analysis on data after vst
2.7 years ago linouhao ▴ 20
0
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1
reply
2.8k
views
Comment: Comment: how can I do gene differential analysis on data after vst
2.7 years ago linouhao ▴ 20
6
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5
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12k
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how to understand cpm=1 and how filterByExpr works?
edger
updated 3.6 years ago by ▴ 10 • written 5.3 years ago by ▴ 20
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0
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3.2k
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Comment: C: how to normalize data for rna-seq after limma for heatmap or cox
5.2 years ago linouhao ▴ 20
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1
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3.2k
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Comment: C: how to normalize data for rna-seq after limma for heatmap or cox
5.2 years ago linouhao ▴ 20
3
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4
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3.2k
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how to normalize data for rna-seq after limma for heatmap or cox
limma
updated 5.2 years ago by ★ 4.0k • written 5.2 years ago by ▴ 20
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1
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3.1k
views
Comment: Comment: can negative value microarray matrix data analysed by limma directly
updated 2.7 years ago by 53k • written 5.2 years ago by ▴ 20
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0
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1.1k
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Comment: C: two color array data analysis by limma
5.2 years ago linouhao ▴ 20
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1
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1.1k
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Comment: C: two color array data analysis by limma
5.2 years ago linouhao ▴ 20
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2
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1.1k
views
two color array data analysis by limma
limma
updated 5.2 years ago by ★ 4.0k • written 5.2 years ago by ▴ 20
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0
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1.4k
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Comment: C: limma for no replicate array
5.2 years ago linouhao ▴ 20
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0
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1.4k
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Comment: C: limma for no replicate array
5.2 years ago linouhao ▴ 20
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0
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1.4k
views
Comment: C: limma for no replicate array
updated 5.2 years ago by 53k • written 5.2 years ago by ▴ 20
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0
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1.4k
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Comment: C: limma for no replicate array
5.2 years ago linouhao ▴ 20
0
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1
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1.4k
views
Comment: C: limma for no replicate array
5.2 years ago linouhao ▴ 20
4
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9
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1.4k
views
limma for no replicate array
limma
updated 5.2 years ago by 68k • written 5.2 years ago by ▴ 20
1
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0
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12k
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Comment: C: how to understand cpm=1 and how filterByExpr works?
5.3 years ago linouhao ▴ 20
0
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2
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12k
views
Comment: C: how to understand cpm=1 and how filterByExpr works?
5.3 years ago linouhao ▴ 20
0
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0
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1.3k
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Comment: C: how should I understand the coef=1 in limma
5.3 years ago linouhao ▴ 20
0
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0
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7.2k
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Comment: C: limma voom and trend
5.3 years ago linouhao ▴ 20
0
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1
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7.2k
views
Comment: C: limma voom and trend
5.3 years ago linouhao ▴ 20
0
votes
1
reply
7.2k
views
Comment: C: limma voom and trend
updated 5.3 years ago by ★ 4.0k • written 5.3 years ago by ▴ 20
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1
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2.0k
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Comment: C: do cox and km plot
5.3 years ago linouhao ▴ 20
0
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1
reply
703
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do cox and km plot
limma edger
updated 5.3 years ago by ★ 4.0k • written 5.3 years ago by ▴ 20
0
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1
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2.0k
views
Comment: C: do cox and km plot
5.3 years ago linouhao ▴ 20
1
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2
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1.2k
views
tcga and geo train and validation sets
deseq2 normalization
updated 5.3 years ago by 43k • written 5.3 years ago by ▴ 20
1
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2
replies
1.3k
views
how should I understand the coef=1 in limma
limma
5.3 years ago linouhao ▴ 20
0
votes
1
reply
7.2k
views
Comment: C: limma voom and trend
5.3 years ago linouhao ▴ 20
0
votes
1
reply
2.0k
views
Comment: C: do cox and km plot
5.3 years ago linouhao ▴ 20
0
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0
replies
7.2k
views
Comment: C: limma voom and trend
5.3 years ago linouhao ▴ 20
7
votes
16
replies
7.2k
views
limma voom and trend
limma
updated 5.3 years ago by 53k • written 5.3 years ago by ▴ 20
0
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1
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2.0k
views
Comment: C: do cox and km plot
5.3 years ago linouhao ▴ 20
0
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1
reply
2.0k
views
Comment: C: do cox and km plot
5.3 years ago linouhao ▴ 20
3
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11
replies
2.0k
views
do cox and km plot
deseq2
updated 5.3 years ago by 43k • written 5.3 years ago by ▴ 20
0
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2
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7.2k
views
Comment: C: limma voom and trend
5.3 years ago linouhao ▴ 20
0
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0
replies
2.7k
views
Comment: C: Minimum required samples for RNA-seq differential Analysis?
5.3 years ago linouhao ▴ 20
0
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1
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2.7k
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Comment: C: Minimum required samples for RNA-seq differential Analysis?
5.3 years ago linouhao ▴ 20
2
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4
replies
2.7k
views
Minimum required samples for RNA-seq differential Analysis?
deseq2 limma edger
5.3 years ago linouhao ▴ 20
0
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0
replies
23k
views
Comment: C: deseq2 normalized data with heatmap
5.3 years ago linouhao ▴ 20
0
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1
reply
23k
views
Comment: C: deseq2 normalized data with heatmap
5.3 years ago linouhao ▴ 20
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