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getGFFSet function CRASHES R session
getGFF NCBI biomartr biomaRt
4.4 years ago Matan G. ▴ 60
3
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3
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3.2k
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What lengths are used to calculate TPM in "scater" package
scater calculateTPM RNAseq
updated 5.2 years ago by ★ 29k • written 5.2 years ago by ▴ 60
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0
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1.7k
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Comment: C: Re-calculation of Padj (P adjusted value)
5.2 years ago Matan G. ▴ 60
1
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2
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1.7k
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 5.2 years ago by 43k • written 5.2 years ago by ▴ 60
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0
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3.1k
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Comment: C: DESeq2: Variables in the design section
5.3 years ago Matan G. ▴ 60
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1
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3.1k
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Comment: C: DESeq2: Variables in the design section
5.3 years ago Matan G. ▴ 60
0
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1
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3.1k
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Comment: C: DESeq2: Variables in the design section
5.3 years ago Matan G. ▴ 60
0
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1
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3.1k
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Comment: C: DESeq2: Variables in the design section
5.3 years ago Matan G. ▴ 60
2
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7
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3.1k
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DESeq2: Variables in the design section
deseq2
updated 5.3 years ago by 43k • written 5.3 years ago by ▴ 60
2
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1
reply
3.3k
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ensembl to hgnc symbols creates duplicates
r biomart genemap TPM
updated 5.4 years ago by ★ 4.0k • written 5.4 years ago by ▴ 60
1
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0
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12k
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Comment: C: Deconvolution with CIBERSORT: input data
5.4 years ago Matan G. ▴ 60
0
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1
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12k
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Comment: C: Deconvolution with CIBERSORT: input data
5.4 years ago Matan G. ▴ 60
2
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4
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12k
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Deconvolution with CIBERSORT: input data
normalization r vst cibersort
updated 5.4 years ago by ★ 4.0k • written 5.4 years ago by ▴ 60
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0
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2.1k
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Comment: C: Multiple plots in different windows
5.4 years ago Matan G. ▴ 60
0
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4
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2.1k
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Multiple plots in different windows
plotting
updated 5.4 years ago by ★ 4.0k • written 5.4 years ago by ▴ 60
0
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0
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2.1k
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Comment: C: Multiple plots in different windows
5.4 years ago Matan G. ▴ 60
0
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0
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12k
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Comment: C: Plot PCA with ellipses
5.7 years ago Matan G. ▴ 60
0
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0
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12k
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Comment: C: Plot PCA with ellipses
5.7 years ago Matan G. ▴ 60
0
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1
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12k
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Comment: C: Plot PCA with ellipses
5.7 years ago Matan G. ▴ 60
2
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6
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12k
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Plot PCA with ellipses
pca
updated 5.7 years ago by 43k • written 5.7 years ago by ▴ 60
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0
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2.9k
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Comment: C: Gene Clustering DESeq2 for results
5.8 years ago Matan G. ▴ 60
1
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2
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2.9k
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Gene Clustering DESeq2 for results
deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by ▴ 60
0
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0
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816
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Comment: C: BATCH EFFECT OF AGE
5.8 years ago Matan G. ▴ 60
1
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2
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816
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BATCH EFFECT OF AGE
deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by ▴ 60
2
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1
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6.4k
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Is it possible to remove 3 batches categories using limma
limma
updated 5.9 years ago by 43k • written 5.9 years ago by ▴ 60
0
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1
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52k
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Comment: C: Batch correction in DESeq2
6.1 years ago Matan G. ▴ 60
0
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1
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52k
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Comment: C: Batch correction in DESeq2
6.1 years ago Matan G. ▴ 60
1
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1
reply
1.0k
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Normalized counts access in DESeq2 R: with and without batch
deseq2 edger normalization
updated 6.1 years ago by 43k • written 6.1 years ago by ▴ 60
0
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1
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2.3k
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Comment: C: DESeq2 using 'relevel' for different comparisons
6.1 years ago Matan G. ▴ 60
0
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3
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2.3k
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DESeq2 using 'relevel' for different comparisons
deseq2
updated 6.1 years ago by 43k • written 6.1 years ago by ▴ 60
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