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getGFFSet function CRASHES R session
getGFF NCBI biomartr biomaRt
3.3 years ago Matan G. ▴ 60
3
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3
replies
2.7k
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What lengths are used to calculate TPM in "scater" package
scater calculateTPM RNAseq
updated 4.1 years ago by ★ 28k • written 4.1 years ago by ▴ 60
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0
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1.3k
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Comment: C: Re-calculation of Padj (P adjusted value)
4.1 years ago Matan G. ▴ 60
1
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2
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1.3k
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 4.1 years ago by 42k • written 4.1 years ago by ▴ 60
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0
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2.4k
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Comment: C: DESeq2: Variables in the design section
4.2 years ago Matan G. ▴ 60
0
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1
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2.4k
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Comment: C: DESeq2: Variables in the design section
4.2 years ago Matan G. ▴ 60
0
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1
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2.4k
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Comment: C: DESeq2: Variables in the design section
4.2 years ago Matan G. ▴ 60
0
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1
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2.4k
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Comment: C: DESeq2: Variables in the design section
4.2 years ago Matan G. ▴ 60
2
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7
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2.4k
views
DESeq2: Variables in the design section
deseq2
updated 4.2 years ago by 42k • written 4.2 years ago by ▴ 60
2
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1
reply
2.5k
views
ensembl to hgnc symbols creates duplicates
r biomart genemap TPM
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by ▴ 60
1
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0
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9.4k
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Comment: C: Deconvolution with CIBERSORT: input data
4.3 years ago Matan G. ▴ 60
0
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1
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9.4k
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Comment: C: Deconvolution with CIBERSORT: input data
4.3 years ago Matan G. ▴ 60
2
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4
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9.4k
views
Deconvolution with CIBERSORT: input data
normalization r vst cibersort
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by ▴ 60
0
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0
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1.5k
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Comment: C: Multiple plots in different windows
4.3 years ago Matan G. ▴ 60
0
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4
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1.5k
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Multiple plots in different windows
plotting
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by ▴ 60
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0
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1.5k
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Comment: C: Multiple plots in different windows
4.3 years ago Matan G. ▴ 60
0
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0
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9.3k
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Comment: C: Plot PCA with ellipses
4.6 years ago Matan G. ▴ 60
0
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0
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9.3k
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Comment: C: Plot PCA with ellipses
4.6 years ago Matan G. ▴ 60
0
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1
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9.3k
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Comment: C: Plot PCA with ellipses
4.6 years ago Matan G. ▴ 60
2
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6
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9.3k
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Plot PCA with ellipses
pca
updated 4.6 years ago by 42k • written 4.6 years ago by ▴ 60
0
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0
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2.3k
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Comment: C: Gene Clustering DESeq2 for results
4.7 years ago Matan G. ▴ 60
1
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2
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2.3k
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Gene Clustering DESeq2 for results
deseq2
updated 4.7 years ago by 42k • written 4.7 years ago by ▴ 60
0
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0
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578
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Comment: C: BATCH EFFECT OF AGE
4.7 years ago Matan G. ▴ 60
1
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2
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578
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BATCH EFFECT OF AGE
deseq2
updated 4.7 years ago by 42k • written 4.7 years ago by ▴ 60
2
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1
reply
4.9k
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Is it possible to remove 3 batches categories using limma
limma
updated 4.8 years ago by 42k • written 4.8 years ago by ▴ 60
0
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1
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47k
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Comment: C: Batch correction in DESeq2
5.0 years ago Matan G. ▴ 60
0
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1
reply
47k
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Comment: C: Batch correction in DESeq2
5.0 years ago Matan G. ▴ 60
1
vote
1
reply
836
views
Normalized counts access in DESeq2 R: with and without batch
deseq2 edger normalization
updated 5.0 years ago by 42k • written 5.0 years ago by ▴ 60
0
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1
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1.6k
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Comment: C: DESeq2 using 'relevel' for different comparisons
5.0 years ago Matan G. ▴ 60
0
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3
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1.6k
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DESeq2 using 'relevel' for different comparisons
deseq2
updated 5.0 years ago by 42k • written 5.0 years ago by ▴ 60
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