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biomartr
•
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208
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getGFFSet function CRASHES R session
getGFF
NCBI
biomartr
biomaRt
9 months ago
Matan G.
▴ 40
0
votes
9
replies
700
views
The GO annotation of fugal species outside of 20 model organisms is outdated
GO
biomartr
annotation
ensemble
fungi
updated 12 months ago by
James W. MacDonald
59k • written 12 months ago by
Bettina
• 0
0
votes
0
replies
290
views
taxonomy download from NCBI based on geneID
biomartr
Bioconducter
2.8 years ago
nabiyogesh
▴ 10
0
votes
3
replies
598
views
getGenome {biomartr} not working for viruses?
Genbank
biomartr
Genomic sequences
4.0 years ago
peter.durr
• 0
1
vote
2
replies
441
views
Trouble using getBM with ecaballus_gene_ensembl
biomart
biomartr
updated 4.0 years ago by
James W. MacDonald
59k • written 4.0 years ago by
stephen.williams
▴ 10
5 results • Page
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Comment: Quantile Normalization after rma or not?
by
Yang Shi
• 0
Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…
Answer: how to understand cpm=1 and how filterByExpr works?
by
gowthamee
• 0
I found the following two articles very helpful in explaining the functions "cpm" and "filterByExpr" Article#1: From reads to genes to pat…
Comment: different results in DESeq2 when comparing groups in two ways
by
zohreh.fazelan
• 0
Thank you for your response. But I have few comparisons in which there are more significantly expressed genes in the socond way compared to…
Comment: lmFit, continuous exposure, adjustment covariates
by
Gordon Smyth
45k
Your code `t(dat[43:ncol(dat)]` is not even syntactically correct. It could not possibly run in R. You need to create an expression matrix…
Comment: Handling of missing values in limma
by
Gordon Smyth
45k
limma uses all the observations. There's nothing complicated about it. limma does not remove any persons from the analysis. I did not tel…
Votes
A: redundant probe sets in Affymetrix HG-U219
Answer: Quantile Normalization after rma or not?
Answer: Quantile Normalization after rma or not?
Answer: Using featureCounts and downloading Rsubread
Answer: different results in DESeq2 when comparing groups in two ways
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