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lumi-package problem: nuID [e.g. nuID2EntrezID()] from vignette example throws an error on my system
annotate annotate
11.7 years ago Guest User ★ 13k
0
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1
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2.1k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
0
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1
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2.0k
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Support vector regression
Classification Regression Classification Regression
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ★ 13k
0
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0
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904
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Using \'spliceIndex\' function from \'annmap\' package: How do I know what \'ids\' should be?
probe probe
11.7 years ago Guest User ★ 13k
0
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3
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1.4k
views
Cannot find the package created by pdInfoBuilder package
Annotation BSgenome probe BSgenome Annotation BSgenome probe BSgenome
updated 11.7 years ago by ★ 8.2k • written 11.7 years ago by ★ 13k
1
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4
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4.6k
views
fasta biostrings bioconductor
updated 11.7 years ago by 16k • written 11.7 years ago by ★ 13k
0
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1
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658
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time course differential analysis - design matrix
GO GO
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
0
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5
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2.1k
views
problem with makeGOGraph function
Yeast graph GOstats Yeast graph GOstats
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
0
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2
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3.7k
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problem installing XML
updated 11.7 years ago by ▴ 20 • written 11.7 years ago by ★ 13k
0
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3
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2.3k
views
edgeR GLM to adjust for batch effect
edgeR pvca edgeR pvca
updated 11.7 years ago by ★ 7.9k • written 11.7 years ago by ★ 13k
0
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1
reply
818
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rcModelMedianPolish of the package preprocessCore/ imitate median polish of RMA
Normalization Normalization
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
0
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1
reply
898
views
problem with EdgeR script
edgeR edgeR
updated 11.7 years ago by ★ 7.9k • written 11.7 years ago by ★ 13k
0
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10
replies
3.0k
views
Microarray data analysis
Microarray Microarray
updated 11.7 years ago by 53k • written 11.7 years ago by ★ 13k
0
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24
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4.6k
views
SomaticSignatures
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ★ 13k
0
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0
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766
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The \"retain\" parameter in quality assessment of package PROcess
11.7 years ago Guest User ★ 13k
0
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10
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2.3k
views
Obtain overlap coordinates in GenomicRanges findSpliceOverlaps
updated 11.7 years ago by ★ 11k • written 11.7 years ago by ★ 13k
0
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4
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2.4k
views
alternative for drawtext function in EBImage?
updated 11.7 years ago by ▴ 10 • written 11.7 years ago by ★ 13k
0
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1
reply
1.3k
views
Version 1.10 of spade appears to be non-compatible with Cytoscape 2.8.x
spade spade
updated 11.7 years ago by ▴ 10 • written 11.7 years ago by ★ 13k
0
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0
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1.1k
views
cummeRbund csHeatmap error
cummeRbund cummeRbund
11.7 years ago Guest User ★ 13k
0
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3
replies
1.7k
views
recommend package for exon array analysis
PROcess PROcess
updated 11.7 years ago by ★ 1.3k • written 11.7 years ago by ★ 13k
0
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8
replies
5.6k
views
ComBat: 3 adjustment variables & continuous adjustment variables
GO Category sva GO Category sva
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ★ 13k
1
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3
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3.8k
views
vmatchPattern
updated 3.0 years ago by 16k • written 11.7 years ago by ★ 13k
0
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0
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501
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back into the data frame
probe probe
11.7 years ago Guest User ★ 13k
0
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1
reply
684
views
strsplit
updated 11.7 years ago by ▴ 350 • written 11.7 years ago by ★ 13k
0
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1
reply
1.7k
views
error of makeTranscriptDbFromGFF
updated 11.7 years ago by ★ 7.2k • written 11.7 years ago by ★ 13k
0
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3
replies
2.1k
views
LIMMA/VOOM: Using and Interpretating of natural splines coefficients for time series
limma limma
updated 11.7 years ago by ★ 7.9k • written 11.7 years ago by ★ 13k
0
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1
reply
992
views
Contrasts result interpretation
updated 11.7 years ago by 43k • written 11.7 years ago by ★ 13k
0
votes
1
reply
1.9k
views
mouseData in heatmap of metagenomeSeq package
Metagenomics metagenomeSeq Metagenomics metagenomeSeq
updated 11.7 years ago by ▴ 280 • written 11.7 years ago by ★ 13k
0
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1
reply
1.9k
views
error on heatmap
PROMISE metagenomeSeq PROMISE metagenomeSeq
updated 11.7 years ago by ▴ 280 • written 11.7 years ago by ★ 13k
0
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1
reply
2.2k
views
edgeR time series analysis question
RNASeq RNASeq
updated 11.7 years ago by 53k • written 11.7 years ago by ★ 13k
0
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0
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710
views
maSigPro counts=TRUE negative binomial trouble
11.7 years ago Guest User ★ 13k
0
votes
1
reply
670
views
Limma : Single Channel experiment design matrix
limma limma
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
0
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3
replies
1.4k
views
Select different linear models in voom
updated 11.7 years ago by 53k • written 11.7 years ago by ★ 13k
0
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2
replies
2.2k
views
CummeRbund getGenes command broken in R?
cummeRbund cummeRbund
updated 11.7 years ago by ▴ 140 • written 11.7 years ago by ★ 13k
0
votes
1
reply
1.6k
views
SPIA
Pathways SPIA Pathways SPIA
updated 11.7 years ago by ▴ 570 • written 11.7 years ago by ★ 13k
0
votes
1
reply
880
views
sum the values with same ID
updated 11.7 years ago by 16k • written 11.7 years ago by ★ 13k
0
votes
1
reply
1.1k
views
Version 1.3.4
updated 11.7 years ago by 43k • written 11.7 years ago by ★ 13k
0
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7
replies
10.0k
views
Error message with DESeqDataSet
updated 11.7 years ago by 43k • written 11.7 years ago by ★ 13k
0
votes
1
reply
765
views
results interpretation
DESeq DESeq2 DESeq DESeq2
updated 11.7 years ago by 43k • written 11.7 years ago by ★ 13k
0
votes
1
reply
1.2k
views
Old packages for new version of r
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
0
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1
reply
1.2k
views
DART
DART DART
updated 11.7 years ago by ▴ 40 • written 11.7 years ago by ★ 13k
0
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0
replies
1.4k
views
Power Calculation of multiple factors design of RNA-sequencing study
edgeR DESeq RNASeqPower edgeR DESeq RNASeqPower
11.7 years ago Guest User ★ 13k
0
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0
replies
1.3k
views
Problems with robustPca in pcaMethods
pcaMethods pcaMethods
11.7 years ago Guest User ★ 13k
0
votes
3
replies
1.6k
views
Using Biomart other than Ensembl
Bos taurus biomaRt Bos taurus biomaRt
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
2
votes
2
replies
2.1k
views
get parameters of estimateLogicle
updated 11.7 years ago by ★ 1.3k • written 11.7 years ago by ★ 13k
0
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1
reply
1.3k
views
rtracklayer\'s browseGenome function failes when invoked according to vignette
rtracklayer rtracklayer
updated 11.7 years ago by ★ 11k • written 11.8 years ago by ★ 13k
0
votes
8
replies
3.0k
views
methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 11.8 years ago by ▴ 160 • written 11.8 years ago by ★ 13k
0
votes
6
replies
3.7k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 11.8 years ago by 68k • written 11.8 years ago by ★ 13k
0
votes
1
reply
1.3k
views
bioMart request failed
biomaRt biomaRt
updated 11.8 years ago by ▴ 540 • written 11.8 years ago by ★ 13k
0
votes
2
replies
1.6k
views
Candida albicans AnnotationData Package
Annotation Annotation
updated 4.2 years ago by • 0 • written 11.8 years ago by ★ 13k
1,206 results • Page 6 of 25
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