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questions
0
votes
0
replies
867
views
[R] Problems in running affylmGUI
Cancer
Breast
affylmGUI
Cancer
Breast
affylmGUI
13.4 years ago
James W. MacDonald
65k
0
votes
0
replies
1.6k
views
CORNA and biomaRt packages. miRNA and mRNA expression comparation
miRNA
biomaRt
miRNA
biomaRt
13.4 years ago
James W. MacDonald
65k
0
votes
0
replies
853
views
Simpleaffy problems
Annotation
probe
affy
matchprobes
simpleaffy
AnnotationDbi
Annotation
probe
affy
13.6 years ago
James W. MacDonald
65k
0
votes
0
replies
698
views
[R] error with ReadAffy()
13.7 years ago
James W. MacDonald
65k
0
votes
0
replies
705
views
mogene10stv1 annotation problem
Annotation
GO
cdf
probe
Annotation
GO
cdf
probe
13.9 years ago
James W. MacDonald
65k
0
votes
2
replies
1.2k
views
pulling functional information for SNPs
SNP
affy
biomaRt
rtracklayer
SNP
affy
biomaRt
rtracklayer
updated 14.0 years ago by
Seth Falcon
★ 7.4k • written 14.0 years ago by
James W. MacDonald
65k
0
votes
0
replies
1.1k
views
R: visualization of Loess smoothing curve
GO
Visualization
affy
GO
Visualization
affy
14.0 years ago
James W. MacDonald
65k
0
votes
0
replies
622
views
Using RMA normalization on 3 microarray replicates - valid?
Normalization
Normalization
14.1 years ago
James W. MacDonald
65k
0
votes
1
reply
740
views
affyBatch: probes from intensity table not listed in the output of indexProbes()
Alignment
affy
Alignment
affy
updated 14.3 years ago by
Mikhail Spivakov
▴ 30 • written 14.3 years ago by
James W. MacDonald
65k
0
votes
0
replies
608
views
regarding GCRMA normalization
cdf
probe
cdf
probe
14.3 years ago
James W. MacDonald
65k
0
votes
0
replies
642
views
Regardin GCRMA normalization
cdf
probe
cdf
probe
14.3 years ago
James W. MacDonald
65k
0
votes
0
replies
1.1k
views
[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer
cdf
affy
makecdfenv
Cancer
cdf
affy
makecdfenv
14.3 years ago
James W. MacDonald
65k
0
votes
0
replies
633
views
End of the line of GOstats: making sense of the hypergeometric test results now
GO
PROcess
GOstats
GO
PROcess
GOstats
14.4 years ago
James W. MacDonald
65k
0
votes
0
replies
1.1k
views
Annotation.db: how automatically call a mapping?
Annotation
GO
moe430a
affy
limma
annaffy
affycoretools
Annotation
GO
moe430a
affy
limma
14.8 years ago
James W. MacDonald
65k
0
votes
2
replies
631
views
[Bioc-devel] help with limma design
limma
limma
14.9 years ago
James W. MacDonald
65k
0
votes
0
replies
687
views
MAS5 to selected average
hgu133a
affy
hgu133a
affy
14.9 years ago
James W. MacDonald
65k
0
votes
0
replies
1.3k
views
mget() error with NA values
Microarray
Annotation
hgu133plus2
hgu95av2
AnnotationDbi
Microarray
Annotation
hgu133plus2
15.0 years ago
James W. MacDonald
65k
0
votes
0
replies
1.1k
views
[R] Need to build package for Affy HT HG-U133+ PM arrays
Annotation
GO
cdf
probe
affy
pdInfoBuilder
Annotation
GO
cdf
probe
affy
pdInfoBuilder
15.1 years ago
James W. MacDonald
65k
0
votes
1
reply
1.2k
views
Problem with biomaRt and retrieving annotation for the chip "affy_huex_1_0_st_v2"
Annotation
biomaRt
Annotation
biomaRt
updated 15.1 years ago by
Nenad Bartonicek
▴ 60 • written 15.1 years ago by
James W. MacDonald
65k
0
votes
1
reply
811
views
diferent pvalues for a treatment when other contrasts areremoved from targets file
updated 15.2 years ago by
Agnieszka Zmienko
▴ 50 • written 15.2 years ago by
James W. MacDonald
65k
0
votes
1
reply
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics
cdf
affy
makecdfenv
plier
affxparser
preprocessCore
Epigenetics
cdf
affy
updated 15.4 years ago by
dorothyc
▴ 140 • written 15.4 years ago by
James W. MacDonald
65k
0
votes
0
replies
1.0k
views
problem installing affycoretools in R in linux environment
GO
biomaRt
affycoretools
GO
biomaRt
affycoretools
15.6 years ago
James W. MacDonald
65k
0
votes
2
replies
1.0k
views
probe file for custom array
Microarray
Cancer
cdf
probe
gcrma
matchprobes
Microarray
Cancer
cdf
probe
gcrma
updated 16.2 years ago by
Lana Schaffer
★ 1.3k • written 16.2 years ago by
James W. MacDonald
65k
0
votes
0
replies
755
views
PCA methods for probe level data
probe
affy
convert
probe
affy
convert
16.4 years ago
James W. MacDonald
65k
0
votes
1
reply
744
views
limma design
Microarray
GO
affy
limma
PROcess
Microarray
GO
affy
limma
PROcess
updated 16.9 years ago by
Lev Soinov
▴ 470 • written 16.9 years ago by
James W. MacDonald
65k
0
votes
1
reply
564
views
GOstats hyperGTest( ): Counts of EntrezIDs returned from summary() are not same as the numbers of EntrezIDs extracted from probeSetSummary()
Microarray
GO
Cancer
Microarray
GO
Cancer
17.0 years ago
James W. MacDonald
65k
0
votes
3
replies
1.2k
views
Annotation of U95av2 array
Microarray
Genetics
Annotation
GO
Cancer
hgu95av2
probe
affy
AnnBuilder
PROcess
Genetics
updated 17.0 years ago by
Nianhua Li
▴ 870 • written 17.0 years ago by
James W. MacDonald
65k
0
votes
5
replies
1.2k
views
homology package question
Microarray
Cancer
Microarray
Cancer
updated 17.0 years ago by
John Zhang
★ 2.9k • written 17.0 years ago by
James W. MacDonald
65k
0
votes
0
replies
477
views
ANN:xy2i and i2xy to be deprecated
Microarray
Cancer
cdf
affy
Microarray
Cancer
cdf
affy
17.1 years ago
James W. MacDonald
65k
0
votes
0
replies
562
views
Response - difference between hgu95aprobe and hgu95acdf
Microarray
Cancer
probe
Microarray
Cancer
probe
17.3 years ago
James W. MacDonald
65k
0
votes
2
replies
438
views
How to get the number of Stat pairs used in MAS5
Microarray
Normalization
Cancer
probe
Microarray
Normalization
Cancer
probe
updated 17.4 years ago by
Julie Dickerson
▴ 20 • written 17.4 years ago by
James W. MacDonald
65k
0
votes
0
replies
339
views
fetch filen names
Microarray
Microarray
17.4 years ago
James W. MacDonald
65k
0
votes
0
replies
1.1k
views
question_gene list from venn diagram limma function for two color array data
Microarray
Annotation
Cancer
GOstats
affycoretools
Microarray
Annotation
Cancer
GOstats
17.5 years ago
James W. MacDonald
65k
0
votes
1
reply
230
views
Question about "kidpack" installation
Microarray
Cancer
Microarray
Cancer
updated 17.6 years ago by
Martin Morgan
25k • written 17.6 years ago by
James W. MacDonald
65k
0
votes
2
replies
825
views
about plot rglist
Microarray
Cancer
limma
cycle
Microarray
Cancer
limma
cycle
updated 17.6 years ago by
Jenny Drnevich
★ 2.2k • written 17.6 years ago by
James W. MacDonald
65k
0
votes
2
replies
1.7k
views
summarizing probe intensites before or after normalization- 1. how to do with RMA 2. Opinions?
Microarray
Normalization
Preprocessing
Cancer
probe
affy
convert
affyio
Microarray
Cancer
17.6 years ago
James W. MacDonald
65k
0
votes
0
replies
1.1k
views
how to retrieve data in list using getBM in biomaRt package?
Microarray
GO
Cancer
probe
Biobase
annotate
limma
biomaRt
Microarray
GO
Cancer
probe
17.7 years ago
James W. MacDonald
65k
0
votes
0
replies
223
views
limma: results from different coefficients
Microarray
Microarray
17.9 years ago
James W. MacDonald
65k
0
votes
0
replies
745
views
justGCRMA error in BioC 1.8
Microarray
cdf
affy
gcrma
matchprobes
Microarray
cdf
affy
gcrma
matchprobes
17.9 years ago
James W. MacDonald
65k
0
votes
0
replies
491
views
Bugfix in gcrma
Microarray
Cancer
gcrma
Microarray
Cancer
gcrma
18.0 years ago
James W. MacDonald
65k
0
votes
0
replies
538
views
[R] Problem using GOstats package in R 2.2.1
Microarray
GO
Cancer
GOstats
Microarray
GO
Cancer
GOstats
18.2 years ago
James W. MacDonald
65k
0
votes
1
reply
2.5k
views
F-statistic in limma
Microarray
limma
Microarray
limma
updated 18.2 years ago by
echang4@life.uiuc.edu
▴ 110 • written 18.2 years ago by
James W. MacDonald
65k
0
votes
1
reply
970
views
limma question
Microarray
probe
limma
codelink
Microarray
probe
limma
codelink
updated 18.2 years ago by
Sun, Yezhou
▴ 30 • written 18.2 years ago by
James W. MacDonald
65k
0
votes
1
reply
603
views
justRMA/GCRMA and alternative cdfs
Microarray
Cancer
cdf
probe
affy
Microarray
Cancer
cdf
probe
affy
18.3 years ago
James W. MacDonald
65k
0
votes
5
replies
1.2k
views
Re-mapped Affy CDF files
Microarray
Cancer
cdf
probe
affy
Microarray
Cancer
cdf
probe
affy
18.3 years ago
James W. MacDonald
65k
0
votes
0
replies
770
views
chromLocation
Microarray
probe
ideogram
Microarray
probe
ideogram
18.3 years ago
James W. MacDonald
65k
0
votes
1
reply
243
views
November BioC Devel Changelog
Microarray
Cancer
Microarray
Cancer
updated 18.4 years ago by
Seth Falcon
★ 7.4k • written 18.4 years ago by
James W. MacDonald
65k
0
votes
0
replies
580
views
Database for Microarray Data - request for user stories
Microarray
Annotation
GUI
Cancer
probe
Microarray
Annotation
GUI
Cancer
probe
18.4 years ago
James W. MacDonald
65k
0
votes
0
replies
724
views
getGene in biomaRt package
Microarray
Cancer
cdf
biomaRt
Microarray
Cancer
cdf
biomaRt
18.5 years ago
James W. MacDonald
65k
0
votes
0
replies
528
views
Redirected to BioC Re: [Bioc-devel] aafTableAnn() in annaffy_1.0.18 ?
Microarray
Cancer
Biobase
Microarray
Cancer
Biobase
18.5 years ago
James W. MacDonald
65k
159 results • Page
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