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Comment: Comment: Sharing a collection of datasets in ExperimentHub
6 weeks ago Peter Hickey ▴ 760
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Comment: Comment: emptyDrops new default alpha = Inf giving far fewer non-empty droplets than unde
12 weeks ago Peter Hickey ▴ 760
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891
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Comment: Comment: emptyDrops new default alpha = Inf giving far fewer non-empty droplets than unde
3 months ago Peter Hickey ▴ 760
0
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891
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Comment: Comment: emptyDrops new default alpha = Inf giving far fewer non-empty droplets than unde
3 months ago Peter Hickey ▴ 760
0
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1
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891
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Comment: Comment: emptyDrops new default alpha = Inf giving far fewer non-empty droplets than unde
3 months ago Peter Hickey ▴ 760
0
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1
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891
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Comment: Comment: emptyDrops new default alpha = Inf giving far fewer non-empty droplets than unde
3 months ago Peter Hickey ▴ 760
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11
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891
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emptyDrops new default alpha = Inf giving far fewer non-empty droplets than under old default of alpha = NULL
scrn 10x scRNAseq emptyDrops DropletUtils
3 months ago • updated 12 weeks ago Peter Hickey ▴ 760
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891
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Comment: Comment: emptyDrops new default alpha = Inf giving far fewer non-empty droplets than unde
3 months ago Peter Hickey ▴ 760
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5.7k
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Answer: Answer: How to load scRNA-seq data from GEO
5 months ago Peter Hickey ▴ 760
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2
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1.2k
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Comment: Comment: Possible issue following the logNormCounts(filtered) with resulted fit
5 months ago Peter Hickey ▴ 760
1
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0
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763
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Answer: Answer: SingleCellExperiment convenience function for metadata+expression?
9 months ago Peter Hickey ▴ 760
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1.1k
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Answer: Answer: Integration of Single Cell Experiments with batchelor::fastMNN
12 months ago Peter Hickey ▴ 760
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1.0k
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Comment: Comment: modelGeneVarByPoisson error selecting bandwidth automatically
16 months ago Peter Hickey ▴ 760
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1.0k
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Comment: Comment: modelGeneVarByPoisson error selecting bandwidth automatically
16 months ago Peter Hickey ▴ 760
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1.0k
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Answer: Answer: modelGeneVarByPoisson error selecting bandwidth automatically
16 months ago Peter Hickey ▴ 760
1
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1.4k
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News: Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
Asia BioCAsia Conferences Events BioC
written 3.0 years ago by ▴ 760
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Comment: Comment: Memory errors using read.bismark?
19 months ago Peter Hickey ▴ 760
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1.7k
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Comment: Comment: Memory errors using read.bismark?
19 months ago Peter Hickey ▴ 760
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1.7k
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Answer: Answer: Memory errors using read.bismark?
19 months ago Peter Hickey ▴ 760
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1.5k
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Comment: Comment: Reading huge bismark coverage files using bbseq::read.bismark
19 months ago Peter Hickey ▴ 760
2
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1.5k
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Answer: Answer: Reading huge bismark coverage files using bbseq::read.bismark
19 months ago Peter Hickey ▴ 760
1
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0
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1.7k
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Comment: Comment: Memory errors using read.bismark?
19 months ago Peter Hickey ▴ 760
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1.7k
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Answer: Answer: Memory errors using read.bismark?
19 months ago Peter Hickey ▴ 760
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0
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1.0k
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Job: Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics JobPosting SingleCell Spatial SpatialExperiment
20 months ago Peter Hickey ▴ 760
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1
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2.1k
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Answer: Answer: plotUMAP Gene Set Faceted
21 months ago Peter Hickey ▴ 760
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0
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1.7k
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Answer: Answer: Trouble generating a dendrogram with colored gene modules using WGCNA for large
23 months ago Peter Hickey ▴ 760
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2
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3.7k
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Answer: Answer: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
23 months ago Peter Hickey ▴ 760
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2
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3.7k
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Comment: Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
23 months ago Peter Hickey ▴ 760
0
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0
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788
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Answer: Answer: SingleR Book Not Found
23 months ago Peter Hickey ▴ 760
1
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0
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2.2k
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Answer: Answer: error message when I use the bsseq read.bismark command to read a genome wide cy
2.2 years ago Peter Hickey ▴ 760
0
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1
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2.2k
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Comment: Comment: error message when I use the bsseq read.bismark command to read a genome wide cy
2.3 years ago Peter Hickey ▴ 760
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0
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11k
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Comment: Comment: scran ScoreMarkers throws a warning
2.4 years ago Peter Hickey ▴ 760
0
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0
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1.3k
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Job: Bioinformatics Spatial Omics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
SpatialExperiment JobPosting
2.4 years ago Peter Hickey ▴ 760
0
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0
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1.5k
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Answer: Answer: Choosing the right lower limit for emptyDrops
2.5 years ago Peter Hickey ▴ 760
0
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0
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1.2k
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Job: Bioinformatics Research Assistant at WEHI (Melbourne, Australia)
JobPosting
2.5 years ago Peter Hickey ▴ 760
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1
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3.8k
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Answer: Answer: Remove certain highly expressing cells from a SCE
2.5 years ago Peter Hickey ▴ 760
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0
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1.6k
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Answer: Answer: scRNAseq package and cell type annotations
2.7 years ago Peter Hickey ▴ 760
1
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1
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1.4k
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Comment: Comment: Single-cell differential expression analysis with multiple samples
2.7 years ago Peter Hickey ▴ 760
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0
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2.9k
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Comment: Comment: Pseudo-bulk celltype comparison across conditions from multiple-sources
2.7 years ago Peter Hickey ▴ 760
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1
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1.4k
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Answer: Answer: Single-cell differential expression analysis with multiple samples
2.7 years ago Peter Hickey ▴ 760
0
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1
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2.9k
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Comment: Comment: How to perform batch correction on scRNA-seq with confounding plate effects?
2.7 years ago Peter Hickey ▴ 760
1
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2
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2.1k
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News: Registrations are now open for BioC Asia 2022
Asia BioCAsia Conferences Events News
3.1 years ago • updated 3.0 years ago Peter Hickey ▴ 760
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2.1k
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Answer: Answer: Registrations are now open for BioC Asia 2022
3.0 years ago Peter Hickey ▴ 760
0
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0
replies
2.1k
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Answer: Answer: Registrations are now open for BioC Asia 2022
3.1 years ago Peter Hickey ▴ 760
0
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0
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1.6k
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Comment: Comment: different stat and p values when filtering or not by lfc in DESeq2
3.2 years ago Peter Hickey ▴ 760
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0
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3.1k
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Comment: Comment: read.bismark() ->Error in manager$availability[[as.character(result$node)]] <- T
3.2 years ago Peter Hickey ▴ 760
1
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1
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1.6k
views
Answer: Answer: different stat and p values when filtering or not by lfc in DESeq2
3.2 years ago Peter Hickey ▴ 760
1
vote
1
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3.1k
views
Comment: Comment: read.bismark() ->Error in manager$availability[[as.character(result$node)]] <- T
3.2 years ago Peter Hickey ▴ 760
1
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0
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2.4k
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Answer: Answer: Extract only dataframes from AnnData objects
3.2 years ago Peter Hickey ▴ 760
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0
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4.1k
views
Comment: Comment: `emptyDrops()` calling 'too many' non-empty droplets
3.2 years ago Peter Hickey ▴ 760
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