Bioconductor BioC

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Asia BioCAsia Conferences Events BioC

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bioc Bioconductor

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R bioc

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BioC 2018 Course

6.1 years ago s.munster ▴ 40

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Bioc package installation rforproteomics

updated 7.6 years ago by Laurent Gatto 1.6k • written 7.6 years ago by sarahgrogan • 0

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Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

I should also point out that you can find this out by yourself by going to [ensembl][1], clicking on the Biomart link, and then scrolling t…

Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

It's my understanding that the archived Biomart data are not complete, which is likely why you cannot get sequences. But you apparently jus…

Comment: ComBat_seq function in sva package does not return a matrix by Federico ▴ 10

Thanks for your help, problem solved :)

Answer: ComBat_seq function in sva package does not return a matrix by ATpoint ★ 3.4k

That happens if your `x` is a data.frame rather than a matrix. It is listed under the Q&A section in https://github.com/zhangyuqing/ComBat-…

Answer: error running exp2grn by Fabricio Almeida-Silva ▴ 40

Hi, Adriana. It seems like the gene IDs you specified in `Host13tfs$Protein.ID` do not match any gene IDs in the row names of your expr…

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Teacher to ATpoint ★ 3.4k