Bioconductor 10x

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CellRanger emptyDrops scRNAseq 10X

12 months ago rocanja ▴ 60

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1.1k

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SingleCell emptyDrops 10X

updated 22 months ago by Peter Hickey ▴ 750 • written 23 months ago by sandra.garces.19 • 0

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998

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RNAseq 10X

2.0 years ago wt215 • 0

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.6 years ago Peter Hickey ▴ 750

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1.3k

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DropletUtils emptyDrops 10x

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by Peter Hickey ▴ 750

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1.8k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by vincent.croset ▴ 20

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3.3k

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10x scrna-seq

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by jma1991 ▴ 70

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8.5k

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single-cell 10X Cell calling DropletUtils cellranger

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by xingxd16 ▴ 20

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

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Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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