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DropletUtils emptyDrops 10x

updated 9 months ago by Aaron Lun ★ 27k • written 9 months ago by Peter Hickey ▴ 470

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 15 months ago by Michael Love 34k • written 15 months ago by vincent.croset ▴ 20

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10x scrna-seq

updated 2.5 years ago by Aaron Lun ★ 27k • written 2.5 years ago by jma1991 ▴ 60

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single-cell 10X Cell calling DropletUtils cellranger

updated 2.6 years ago by Aaron Lun ★ 27k • written 2.6 years ago by xingxd16 ▴ 20

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Answer: Error arrayQualityMetrics by Mike Smith ★ 5.2k

I think the most critical looking problem is shown by the part that says: ``` # Error: package or namespace load failed for ‘arrayQuali…

Comment: Getting Bioconductor genome wide annotation for Candida auris by Javan Okendo • 0

I finally got the solution to this problem from [here][1] . Thanks @jamas-w-mcdonald [1]: https://support.bioconductor.org/p/p13452…

Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs) by Guido Hooiveld ★ 3.0k

Have a look at the code after the text `## Functional analysis with clusterProfiler.` You basically will need to define two inputs; which I…

Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs) by Javan Okendo • 0

I managed to download the goa file now. I have the following question, I have differentially expressed proteins following DE analysis. I ca…

Comment: scater::plotHeatmap with swap_rownames gives error by enricoferrero ▴ 570

Thanks Guillame! That indeed works, and I see the logic behind it.

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