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Comment: C: Three factor model matrix, contrasts with interactions - DESeq2 / edgeR
8.5 years ago Alan Smith ▴ 150
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3
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2.0k
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Three factor model matrix, contrasts with interactions - DESeq2 / edgeR
deseq2 edgeR multifactorial design limma voom
updated 8.5 years ago by 43k • written 8.5 years ago by ▴ 150
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7.9k
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Comment: C: DESeq2 multiple interaction terms 3-factor design
8.5 years ago Alan Smith ▴ 150
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3.1k
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Comment: C: Finding nearest neighbors of given hub gene in a co-expression network module
9.6 years ago Alan Smith ▴ 150
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2
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3.1k
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Finding nearest neighbors of given hub gene in a co-expression network module
wgcna rbgl graph coexpression hub genes
updated 9.6 years ago by ★ 3.0k • written 9.6 years ago by ▴ 150
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14k
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Comment: C: ggtree - trouble displaying longer label names
10.1 years ago Alan Smith ▴ 150
5
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3
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14k
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ggtree - trouble displaying longer label names
ggtree
updated 10.1 years ago by ★ 1.2k • written 10.1 years ago by ▴ 150
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1
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6.0k
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Reduce the redundancy of enriched GO terms
GO topgo genesetenrichment
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by ▴ 150
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1.9k
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Comment: C: Binning expression data along with capturing gene identifiers
10.8 years ago Alan Smith ▴ 150
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2
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1.9k
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Binning expression data along with capturing gene identifiers
rnaseqdata clustering
updated 10.8 years ago by ★ 2.1k • written 10.8 years ago by ▴ 150
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1.7k
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Gene Vs Transcript level Differential expression analysis
edgeR Rsubread edgeR Rsubread
12.2 years ago Alan Smith ▴ 150
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Comment: C: RSEM for transcript and gene level read count and edgeR differential expression
12.2 years ago Alan Smith ▴ 150
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6
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7.0k
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RSEM for transcript and gene level read count and edgeR differential expression analysis
edgeR edgeR
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 150
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2.2k
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Answer: A: Rsubread - featureCounts for extracting read counts from De novo assembled trans
12.2 years ago Alan Smith ▴ 150
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5
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2.2k
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.2 years ago Alan Smith ▴ 150
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2.2k
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Answer: A: Rsubread - featureCounts for extracting read counts from De novo assembled trans
12.2 years ago Alan Smith ▴ 150
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0
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1.3k
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts
Annotation GO BSgenome BSgenome Annotation GO BSgenome BSgenome
12.2 years ago Alan Smith ▴ 150
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0
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1.9k
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Comment: C: TranscriptDb object to RangedData for ChIPpeakAnno
12.3 years ago Alan Smith ▴ 150
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1.9k
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Answer: A: TranscriptDb object to RangedData for ChIPpeakAnno
12.3 years ago Alan Smith ▴ 150
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3
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1.9k
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TranscriptDb object to RangedData for ChIPpeakAnno
Annotation GO AnnotationData Organism BSgenome TranscriptDb convert BSgenome ChIPpeakAnno
12.3 years ago Alan Smith ▴ 150
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1
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1.1k
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edgeR - GLM for multifactors
GO edgeR GO edgeR
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 150
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