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Comment: C: Three factor model matrix, contrasts with interactions - DESeq2 / edgeR
7.6 years ago Alan Smith ▴ 150
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3
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1.9k
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Three factor model matrix, contrasts with interactions - DESeq2 / edgeR
deseq2 edgeR multifactorial design limma voom
updated 7.6 years ago by 43k • written 7.6 years ago by ▴ 150
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7.5k
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Comment: C: DESeq2 multiple interaction terms 3-factor design
7.6 years ago Alan Smith ▴ 150
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2.8k
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Comment: C: Finding nearest neighbors of given hub gene in a co-expression network module
8.7 years ago Alan Smith ▴ 150
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2
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2.8k
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Finding nearest neighbors of given hub gene in a co-expression network module
wgcna rbgl graph coexpression hub genes
updated 8.7 years ago by ★ 3.0k • written 8.7 years ago by ▴ 150
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0
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13k
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Comment: C: ggtree - trouble displaying longer label names
9.2 years ago Alan Smith ▴ 150
5
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3
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13k
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ggtree - trouble displaying longer label names
ggtree
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by ▴ 150
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1
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5.6k
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Reduce the redundancy of enriched GO terms
GO topgo genesetenrichment
updated 9.9 years ago by ★ 1.6k • written 9.9 years ago by ▴ 150
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1.7k
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Comment: C: Binning expression data along with capturing gene identifiers
9.9 years ago Alan Smith ▴ 150
1
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2
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1.7k
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Binning expression data along with capturing gene identifiers
rnaseqdata clustering
updated 9.9 years ago by ★ 2.1k • written 9.9 years ago by ▴ 150
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1.6k
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Gene Vs Transcript level Differential expression analysis
edgeR Rsubread edgeR Rsubread
11.3 years ago Alan Smith ▴ 150
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Comment: C: RSEM for transcript and gene level read count and edgeR differential expression
11.3 years ago Alan Smith ▴ 150
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6
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6.7k
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RSEM for transcript and gene level read count and edgeR differential expression analysis
edgeR edgeR
updated 11.3 years ago by ★ 13k • written 11.3 years ago by ▴ 150
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1.9k
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Answer: A: Rsubread - featureCounts for extracting read counts from De novo assembled trans
11.4 years ago Alan Smith ▴ 150
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5
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
11.4 years ago Alan Smith ▴ 150
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1.9k
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Answer: A: Rsubread - featureCounts for extracting read counts from De novo assembled trans
11.4 years ago Alan Smith ▴ 150
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0
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1.2k
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts
Annotation GO BSgenome BSgenome Annotation GO BSgenome BSgenome
11.4 years ago Alan Smith ▴ 150
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0
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1.7k
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Comment: C: TranscriptDb object to RangedData for ChIPpeakAnno
11.4 years ago Alan Smith ▴ 150
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1.7k
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Answer: A: TranscriptDb object to RangedData for ChIPpeakAnno
11.4 years ago Alan Smith ▴ 150
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3
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1.7k
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TranscriptDb object to RangedData for ChIPpeakAnno
Annotation GO AnnotationData Organism BSgenome TranscriptDb convert BSgenome ChIPpeakAnno
11.4 years ago Alan Smith ▴ 150
0
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1
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951
views
edgeR - GLM for multifactors
GO edgeR GO edgeR
updated 11.5 years ago by 67k • written 11.5 years ago by ▴ 150
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