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16
votes
19
replies
22k
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DESeq2: add annotations (from data frame) to DESeqDataSet
deseq2 annotation granges
updated 3.9 years ago by ▴ 60 • written 11.2 years ago by ▴ 130
1
vote
0
replies
3.7k
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Comment: C: How to normalize chromatin and RNA-Seq data together ?
8.8 years ago Darya Vanichkina ▴ 130
1
vote
0
replies
2.3k
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Answer: A: Comparing two RNAseq experiments using summarizeOverlaps
8.8 years ago Darya Vanichkina ▴ 130
0
votes
0
replies
6.1k
views
Comment: C: Error with featureCounts
9.0 years ago Darya Vanichkina ▴ 130
0
votes
0
replies
1.3k
views
Comment: C: Removing trended biases between HiC libraries
9.1 years ago Darya Vanichkina ▴ 130
0
votes
1
reply
1.5k
views
Comment: C: Interpreting strand orientation plots in diffHic
9.1 years ago Darya Vanichkina ▴ 130
1
vote
2
replies
1.3k
views
Removing trended biases between HiC libraries
diffhic
updated 9.1 years ago by ★ 29k • written 9.1 years ago by ▴ 130
1
vote
3
replies
1.5k
views
Interpreting strand orientation plots in diffHic
diffhic
updated 9.1 years ago by ★ 29k • written 9.1 years ago by ▴ 130
3
votes
1
reply
2.0k
views
goseq pwf length bias plot: interpreting plot
goseq
updated 9.5 years ago by 53k • written 9.5 years ago by ▴ 130
0
votes
1
reply
2.1k
views
Comment: C: biomaRt File './ensembl_mart_84/mmusculus_gene_ensembl__translation__main.MYD' n
9.6 years ago Darya Vanichkina ▴ 130
0
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0
replies
4.7k
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Comment: C: Gene ontology and pathway analysis in R - replicate ToppGene features; best stra
9.6 years ago Darya Vanichkina ▴ 130
0
votes
3
replies
4.7k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo biomart gene ontology goexpress pathway analysis
updated 9.6 years ago by ▴ 350 • written 9.6 years ago by ▴ 130
1
vote
1
reply
2.0k
views
Loading a precomputed interaction matrix into diffHiC
diffhic
updated 9.6 years ago by ★ 29k • written 9.6 years ago by ▴ 130
2
votes
4
replies
2.1k
views
biomaRt File './ensembl_mart_84/mmusculus_gene_ensembl__translation__main.MYD' not found (Errcode: 13)
biomart
9.6 years ago Darya Vanichkina ▴ 130
1
vote
0
replies
2.1k
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Answer: A: DEXSeq warnings for millions of reads
9.7 years ago Darya Vanichkina ▴ 130
1
vote
1
reply
5.8k
views
Answer: A: featureCounts (sourceforge) not returning any counts in count table, even though
9.9 years ago Darya Vanichkina ▴ 130
2
votes
4
replies
5.8k
views
featureCounts (sourceforge) not returning any counts in count table, even though summary indicates reads were assigned?
featurecounts software error
9.9 years ago Darya Vanichkina ▴ 130
0
votes
0
replies
5.8k
views
Comment: C: featureCounts (sourceforge) not returning any counts in count table, even though
9.9 years ago Darya Vanichkina ▴ 130
0
votes
1
reply
3.6k
views
Comment: C: [rtracklayer] Error in .local(con, format, text, ...) : unused argument (asRange
10.0 years ago Darya Vanichkina ▴ 130
0
votes
0
replies
3.6k
views
Comment: C: [rtracklayer] Error in .local(con, format, text, ...) : unused argument (asRange
10.0 years ago Darya Vanichkina ▴ 130
2
votes
6
replies
3.6k
views
[rtracklayer] Error in .local(con, format, text, ...) : unused argument (asRangedData = FALSE)
software error rtracklayer
updated 10.0 years ago by ★ 11k • written 10.0 years ago by ▴ 130
2
votes
1
reply
4.3k
views
Yet another DESeq2 nested design contrast matrix question
deseq2 design and contrast matrix
11.2 years ago Darya Vanichkina ▴ 130
1
vote
1
reply
22k
views
Comment: C: DESeq2: add annotations (from data frame) to DESeqDataSet
11.2 years ago Darya Vanichkina ▴ 130
0
votes
1
reply
7.3k
views
Comment: C: Too many (?) differentially expressed genes - edgeR and DESeq
12.4 years ago Darya Vanichkina ▴ 130
2
votes
4
replies
7.3k
views
Too many (?) differentially expressed genes - edgeR and DESeq
PROcess edgeR DESeq PROcess edgeR DESeq
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 130
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