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Comment: Comment: DeSeq2 design fails (full model matrix is less than full rank)
2.4 years ago Theo ▴ 10
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Comment: Comment: DeSeq2 design fails (full model matrix is less than full rank)
2.4 years ago Theo ▴ 10
0
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5
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1.4k
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DeSeq2 design fails (full model matrix is less than full rank)
DESeq2
updated 2.4 years ago by 68k • written 2.4 years ago by ▴ 10
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Comment: Comment: DESeq2 alternative hypyothesis: testing for genes NOT significantly downregulate
2.5 years ago Theo ▴ 10
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Comment: Comment: diffbind dba.count error "files could not be accessed" on windows 11
2.6 years ago Theo ▴ 10
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Comment: Comment: diffbind dba.count error "files could not be accessed" on windows 11
2.6 years ago Theo ▴ 10
1
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4
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1.8k
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diffbind dba.count error "files could not be accessed" on windows 11
DiffBind
2.6 years ago Theo ▴ 10
0
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Comment: Comment: ranking the DeSeq2 results using t-values?
2.6 years ago Theo ▴ 10
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2.9k
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Comment: Comment: ranking the DeSeq2 results using t-values?
2.7 years ago Theo ▴ 10
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2.9k
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Comment: Comment: ranking the DeSeq2 results using t-values?
2.7 years ago Theo ▴ 10
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9
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2.9k
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ranking the DeSeq2 results using t-values?
DESeq2
updated 2.6 years ago by 43k • written 2.7 years ago by ▴ 10
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2.9k
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Comment: Comment: ranking the DeSeq2 results using t-values?
2.7 years ago Theo ▴ 10
0
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1.5k
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Comment: Comment: how to iterate all comparisons in group with "coef =" ?
3.1 years ago Theo ▴ 10
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3
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1.5k
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how to iterate all comparisons in group with "coef =" ?
DESeq2
updated 3.1 years ago by 43k • written 3.1 years ago by ▴ 10
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use diffbind with normilized bedgraph files from spike ins
diffbind chip-seq chip spike spike-ins
updated 5.7 years ago by ★ 5.3k • written 5.8 years ago by ▴ 10
1
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4
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1.8k
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in diffbind dba.peakset what is the meaning of minOverlap?
diffbind chip-seq dba.peakset
updated 6.3 years ago by ★ 5.3k • written 6.4 years ago by ▴ 10
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1.8k
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Comment: C: in diffbind dba.peakset what is the meaning of minOverlap?
6.4 years ago Theo ▴ 10
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1.8k
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Comment: C: in diffbind dba.peakset what is the meaning of minOverlap?
6.4 years ago Theo ▴ 10
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1
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1.1k
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Comment: C: diffbind plotVenn by Factor
6.4 years ago Theo ▴ 10
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3
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1.1k
views
diffbind plotVenn by Factor
diffbind plotVenn
updated 6.4 years ago by ★ 5.3k • written 6.4 years ago by ▴ 10
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1
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2.3k
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Comment: C: DeSeq2 Design (A-B)-(C-D)
6.4 years ago Theo ▴ 10
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2.3k
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Comment: C: DeSeq2 Design (A-B)-(C-D)
6.4 years ago Theo ▴ 10
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1.9k
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Comment: C: diffbind dba.plotvolcano bLabels option use genames instead of numbers
6.4 years ago Theo ▴ 10
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1
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1.9k
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Comment: C: diffbind dba.plotvolcano bLabels option use genames instead of numbers
6.5 years ago Theo ▴ 10
0
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4
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1.9k
views
diffbind dba.plotvolcano bLabels option use genames instead of numbers
diffbind
updated 6.5 years ago by ★ 5.3k • written 6.6 years ago by ▴ 10
0
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0
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2.5k
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Answer: A: Normalized count in edger
6.6 years ago Theo ▴ 10
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1
reply
3.6k
views
error in readPeakFile {chipseeker}
ChIPseeker readPeakFile
6.8 years ago Theo ▴ 10
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1.6k
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Comment: C: Problem in using covplot ChIPseeker
6.8 years ago Theo ▴ 10
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1
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2.8k
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Comment: C: atacseqQC error while splittin the bamfile
6.8 years ago Theo ▴ 10
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2.8k
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Comment: C: atacseqQC error while splittin the bamfile
6.8 years ago Theo ▴ 10
0
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6
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2.8k
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atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 6.8 years ago by • 0 • written 6.8 years ago by ▴ 10
0
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0
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1.5k
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Is it possible to use Rnbeads with WGBS data from epigenetics roadmap/ucsc data
rnbeads wgbs
8.4 years ago Theo ▴ 10
0
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2.4k
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Comment: C: FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base
9.5 years ago Theo ▴ 10
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0
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1.5k
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Comment: C: FourCseq, rawRanges Description
9.5 years ago Theo ▴ 10
0
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2
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1.5k
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FourCseq, rawRanges Description
fourcseq
updated 9.5 years ago by ▴ 150 • written 9.6 years ago by ▴ 10
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1
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2.4k
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Answer: A: FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base
9.6 years ago Theo ▴ 10
1
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8
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2.4k
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FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base cutter
fourcseq
9.6 years ago Theo ▴ 10
0
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1
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2.4k
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Comment: C: FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base
9.6 years ago Theo ▴ 10
0
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1
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2.4k
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Answer: A: FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base
9.6 years ago Theo ▴ 10
0
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0
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1.4k
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Answer: A: FourCseq: mixed amount of replication/samples
9.6 years ago Theo ▴ 10
0
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2
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1.4k
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FourCseq: mixed amount of replication/samples
fourcseq
9.6 years ago Theo ▴ 10
0
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2
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1.3k
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Basic4Cseq, degenerate sites
Basic4Cseq basic4cseq degenerate sites
9.6 years ago Theo ▴ 10
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1.3k
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Answer: A: Basic4Cseq, degenerate sites
9.6 years ago Theo ▴ 10
0
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1
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5.8k
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Comment: C: FourCseq - error countFragmentOverlaps()
9.6 years ago Theo ▴ 10
0
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0
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1.2k
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r3cseq error after finishing the work
r3cseq 4c
10.6 years ago Theo ▴ 10
0
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0
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5.8k
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Comment: C: FourCseq - error countFragmentOverlaps()
10.7 years ago Theo ▴ 10
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1
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5.8k
views
Comment: C: FourCseq - error countFragmentOverlaps()
10.7 years ago Theo ▴ 10
4
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27
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5.8k
views
FourCseq - error countFragmentOverlaps()
FourCseq fourcseq
updated 10.7 years ago by • 0 • written 10.7 years ago by ▴ 10
0
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1
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5.8k
views
Answer: A: FourCseq - error countFragmentOverlaps()
10.7 years ago Theo ▴ 10
0
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0
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5.8k
views
Answer: A: FourCseq - error countFragmentOverlaps()
10.7 years ago Theo ▴ 10
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