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r3cseq
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485
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r3cseq error with trimmed sequence as input
r3cseq
bam
trimmed
3.6 years ago
ch_el
▴ 10
0
votes
1
reply
914
views
r3Cseq problems in batch mode
r3Cseq
updated 6.5 years ago by
izzy.yichao.cai
▴ 10 • written 7.7 years ago by
manduchi
▴ 10
0
votes
0
replies
741
views
r3Cseq and rat genome
4Cseq
r3cseq
7.3 years ago
tlgolan
• 0
0
votes
0
replies
862
views
r3cseq error after finishing the work
r3cseq
4c
8.4 years ago
Theo
• 0
0
votes
0
replies
733
views
r3Cseq file name convention
r3Cseq
8.6 years ago
felix.klein
▴ 150
5 results • Page
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Recent ...
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Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
by
James W. MacDonald
64k
The short answer is that you don't. `tximport` is meant to summarize transcript abundance estimates at the gene level, and as you might ima…
Comment: Inconsistent results in DiffBind
by
ATpoint
★ 3.6k
One is the "raw" logFCs, not corrected for the standard error of the logFCs, the other one the shrunken logFCs from DESeq2 lfcShrink, "corr…
Answer: Can't download Bioconductor
by
James W. MacDonald
64k
[You need to update][1]. [1]: https://cran.r-project.org/web/packages/BiocManager/vignettes/BiocManager.html#basic-use
Comment: Can't download Bioconductor
by
ATpoint
★ 3.6k
Please see especially the 1st and 2nd point in https://www.bioconductor.org/help/support/posting-guide/#keypoints
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
Michael Love
41k
With 3 vs 3, when one sample increases from 50 to 5000, this can lead to rejection of null hypothesis. I'm not surprised with the above cou…
Votes
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
Answer: WGCNA documentation not available
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Comment: Can the limma package be applied to Log2 RUV-normalized data?
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