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3
votes
1
reply
563
views
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
DESeq2
updated 7 months ago by 42k • written 7 months ago by ▴ 40
0
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2
replies
1.1k
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Comment: Comment: Quickly calculating adjusted Fold Change with DESeq2
12 months ago i.sudbery ▴ 40
1
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1
reply
1.5k
views
Comment: Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
2.6 years ago i.sudbery ▴ 40
0
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0
replies
1.4k
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Comment: Comment: Use of shrunken LFCs to address questions about the distribution of LFCs between
2.9 years ago i.sudbery ▴ 40
1
vote
2
replies
1.4k
views
Use of shrunken LFCs to address questions about the distribution of LFCs between gene categories.
deseq2 apeglm DESeq2
2.9 years ago i.sudbery ▴ 40
0
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1
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2.1k
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Comment: Comment: Choosing an svalue threshold from apeglm shrunken results in DESeq2
3.2 years ago i.sudbery ▴ 40
2
votes
3
replies
2.1k
views
Choosing an svalue threshold from apeglm shrunken results in DESeq2
apeglm DESeq2
updated 3.2 years ago by 42k • written 3.2 years ago by ▴ 40
0
votes
1
reply
623
views
Comment: C: Nested design vs averaging coefficients
5.0 years ago i.sudbery ▴ 40
0
votes
3
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623
views
Nested design vs averaging coefficients
deseq2
updated 5.0 years ago by 42k • written 5.0 years ago by ▴ 40
0
votes
1
reply
918
views
Comment: C: Extracting within subject effect in a between and within subject model with DESe
5.6 years ago i.sudbery ▴ 40
3
votes
3
replies
918
views
Extracting within subject effect in a between and within subject model with DESeq2
deseq2 design
updated 5.6 years ago by 42k • written 5.6 years ago by ▴ 40
0
votes
1
reply
4.2k
views
Comment: C: Batch Correction with only one sample in a batch
6.5 years ago i.sudbery ▴ 40
6
votes
7
replies
4.2k
views
Batch Correction with only one sample in a batch
batch effect deseq2 limma
updated 6.5 years ago by ★ 7.9k • written 6.5 years ago by ▴ 40
0
votes
0
replies
699
views
Meaning oflLog2fold change in DEXseqResults object
dexseq
7.1 years ago i.sudbery ▴ 40
0
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0
replies
1.8k
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Comment: C: GOseq: Correct for gene length or read count?
7.2 years ago i.sudbery ▴ 40
0
votes
2
replies
1.8k
views
GOseq: Correct for gene length or read count?
goseq dexseq
7.3 years ago • updated 7.2 years ago i.sudbery ▴ 40
0
votes
1
reply
36k
views
Comment: C: DESeq2 and shrinkage of log2 fold changes
7.5 years ago i.sudbery ▴ 40
0
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0
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2.0k
views
Comment: C: Reactome pathways in ReactomeDB/graphite
7.9 years ago i.sudbery ▴ 40
5
votes
4
replies
2.0k
views
Reactome pathways in ReactomeDB/graphite
reactomepa reactome graphite
updated 7.9 years ago by ▴ 100 • written 7.9 years ago by ▴ 40
2
votes
3
replies
4.1k
views
voom on normalised counts
limma voom rnaseq
updated 7.9 years ago by ★ 28k • written 7.9 years ago by ▴ 40
0
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0
replies
1.2k
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Comment: C: Resummarisation of Exon array normalised at probeset level to gene level
9.4 years ago i.sudbery ▴ 40
0
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1
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1.2k
views
Comment: C: Resummarisation of Exon array normalised at probeset level to gene level
9.4 years ago i.sudbery ▴ 40
0
votes
4
replies
1.2k
views
Resummarisation of Exon array normalised at probeset level to gene level
normalization oligo limma
updated 9.4 years ago by 67k • written 9.4 years ago by ▴ 40
0
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0
replies
1.5k
views
Comment: C: DEXSeq: Testing only a subset of exons
9.4 years ago i.sudbery ▴ 40
0
votes
2
replies
1.5k
views
DEXSeq: Testing only a subset of exons
dexseq
9.4 years ago i.sudbery ▴ 40
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