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3
votes
1
reply
926
views
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
DESeq2
updated 20 months ago by 43k • written 20 months ago by ▴ 40
0
votes
2
replies
1.7k
views
Comment: Comment: Quickly calculating adjusted Fold Change with DESeq2
2.2 years ago i.sudbery ▴ 40
1
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1
reply
2.0k
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Comment: Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
3.7 years ago i.sudbery ▴ 40
0
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0
replies
1.8k
views
Comment: Comment: Use of shrunken LFCs to address questions about the distribution of LFCs between
4.0 years ago i.sudbery ▴ 40
1
vote
2
replies
1.8k
views
Use of shrunken LFCs to address questions about the distribution of LFCs between gene categories.
deseq2 apeglm DESeq2
4.0 years ago i.sudbery ▴ 40
0
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1
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2.7k
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Comment: Comment: Choosing an svalue threshold from apeglm shrunken results in DESeq2
4.3 years ago i.sudbery ▴ 40
2
votes
3
replies
2.7k
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Choosing an svalue threshold from apeglm shrunken results in DESeq2
apeglm DESeq2
updated 4.3 years ago by 43k • written 4.4 years ago by ▴ 40
0
votes
1
reply
810
views
Comment: C: Nested design vs averaging coefficients
6.1 years ago i.sudbery ▴ 40
0
votes
3
replies
810
views
Nested design vs averaging coefficients
deseq2
updated 6.1 years ago by 43k • written 6.1 years ago by ▴ 40
0
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1
reply
1.2k
views
Comment: C: Extracting within subject effect in a between and within subject model with DESe
6.8 years ago i.sudbery ▴ 40
3
votes
3
replies
1.2k
views
Extracting within subject effect in a between and within subject model with DESeq2
deseq2 design
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 40
0
votes
1
reply
5.4k
views
Comment: C: Batch Correction with only one sample in a batch
7.7 years ago i.sudbery ▴ 40
6
votes
7
replies
5.4k
views
Batch Correction with only one sample in a batch
batch effect deseq2 limma
updated 7.7 years ago by ★ 7.9k • written 7.7 years ago by ▴ 40
0
votes
0
replies
849
views
Meaning oflLog2fold change in DEXseqResults object
dexseq
8.3 years ago i.sudbery ▴ 40
0
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0
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2.1k
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Comment: C: GOseq: Correct for gene length or read count?
8.4 years ago i.sudbery ▴ 40
0
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2
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2.1k
views
GOseq: Correct for gene length or read count?
goseq dexseq
8.4 years ago i.sudbery ▴ 40
0
votes
1
reply
42k
views
Comment: C: DESeq2 and shrinkage of log2 fold changes
8.7 years ago i.sudbery ▴ 40
0
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0
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2.6k
views
Comment: C: Reactome pathways in ReactomeDB/graphite
9.0 years ago i.sudbery ▴ 40
5
votes
4
replies
2.6k
views
Reactome pathways in ReactomeDB/graphite
reactomepa reactome graphite
updated 9.0 years ago by ▴ 100 • written 9.0 years ago by ▴ 40
2
votes
3
replies
4.7k
views
voom on normalised counts
limma voom rnaseq
updated 9.1 years ago by ★ 29k • written 9.1 years ago by ▴ 40
0
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0
replies
1.4k
views
Comment: C: Resummarisation of Exon array normalised at probeset level to gene level
10.5 years ago i.sudbery ▴ 40
0
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1
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1.4k
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Comment: C: Resummarisation of Exon array normalised at probeset level to gene level
10.5 years ago i.sudbery ▴ 40
0
votes
4
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1.4k
views
Resummarisation of Exon array normalised at probeset level to gene level
normalization oligo limma
updated 10.5 years ago by 68k • written 10.5 years ago by ▴ 40
0
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0
replies
1.8k
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Comment: C: DEXSeq: Testing only a subset of exons
10.6 years ago i.sudbery ▴ 40
0
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2
replies
1.8k
views
DEXSeq: Testing only a subset of exons
dexseq
10.6 years ago i.sudbery ▴ 40
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