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3
votes
1
reply
674
views
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
DESeq2
updated 11 months ago by 43k • written 11 months ago by ▴ 40
0
votes
2
replies
1.3k
views
Comment: Comment: Quickly calculating adjusted Fold Change with DESeq2
17 months ago i.sudbery ▴ 40
1
vote
1
reply
1.7k
views
Comment: Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
2.9 years ago i.sudbery ▴ 40
0
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0
replies
1.6k
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Comment: Comment: Use of shrunken LFCs to address questions about the distribution of LFCs between
3.2 years ago i.sudbery ▴ 40
1
vote
2
replies
1.6k
views
Use of shrunken LFCs to address questions about the distribution of LFCs between gene categories.
deseq2 apeglm DESeq2
3.2 years ago i.sudbery ▴ 40
0
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1
reply
2.3k
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Comment: Comment: Choosing an svalue threshold from apeglm shrunken results in DESeq2
3.6 years ago i.sudbery ▴ 40
2
votes
3
replies
2.3k
views
Choosing an svalue threshold from apeglm shrunken results in DESeq2
apeglm DESeq2
updated 3.6 years ago by 43k • written 3.6 years ago by ▴ 40
0
votes
1
reply
685
views
Comment: C: Nested design vs averaging coefficients
5.3 years ago i.sudbery ▴ 40
0
votes
3
replies
685
views
Nested design vs averaging coefficients
deseq2
updated 5.3 years ago by 43k • written 5.3 years ago by ▴ 40
0
votes
1
reply
996
views
Comment: C: Extracting within subject effect in a between and within subject model with DESe
6.0 years ago i.sudbery ▴ 40
3
votes
3
replies
996
views
Extracting within subject effect in a between and within subject model with DESeq2
deseq2 design
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 40
0
votes
1
reply
4.7k
views
Comment: C: Batch Correction with only one sample in a batch
6.9 years ago i.sudbery ▴ 40
6
votes
7
replies
4.7k
views
Batch Correction with only one sample in a batch
batch effect deseq2 limma
updated 6.9 years ago by ★ 7.9k • written 6.9 years ago by ▴ 40
0
votes
0
replies
744
views
Meaning oflLog2fold change in DEXseqResults object
dexseq
7.5 years ago i.sudbery ▴ 40
0
votes
0
replies
1.9k
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Comment: C: GOseq: Correct for gene length or read count?
7.6 years ago i.sudbery ▴ 40
0
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2
replies
1.9k
views
GOseq: Correct for gene length or read count?
goseq dexseq
7.6 years ago i.sudbery ▴ 40
0
votes
1
reply
39k
views
Comment: C: DESeq2 and shrinkage of log2 fold changes
7.9 years ago i.sudbery ▴ 40
0
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0
replies
2.2k
views
Comment: C: Reactome pathways in ReactomeDB/graphite
8.2 years ago i.sudbery ▴ 40
5
votes
4
replies
2.2k
views
Reactome pathways in ReactomeDB/graphite
reactomepa reactome graphite
updated 8.2 years ago by ▴ 100 • written 8.2 years ago by ▴ 40
2
votes
3
replies
4.3k
views
voom on normalised counts
limma voom rnaseq
updated 8.3 years ago by ★ 28k • written 8.3 years ago by ▴ 40
0
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0
replies
1.2k
views
Comment: C: Resummarisation of Exon array normalised at probeset level to gene level
9.8 years ago i.sudbery ▴ 40
0
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1
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1.2k
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Comment: C: Resummarisation of Exon array normalised at probeset level to gene level
9.8 years ago i.sudbery ▴ 40
0
votes
4
replies
1.2k
views
Resummarisation of Exon array normalised at probeset level to gene level
normalization oligo limma
updated 9.8 years ago by 68k • written 9.8 years ago by ▴ 40
0
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0
replies
1.6k
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Comment: C: DEXSeq: Testing only a subset of exons
9.8 years ago i.sudbery ▴ 40
0
votes
2
replies
1.6k
views
DEXSeq: Testing only a subset of exons
dexseq
9.8 years ago i.sudbery ▴ 40
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