0
votes
1
reply
1.2k
views
GenomeGraphs alternate input
GenomeGraphs GenomeGraphs
updated 17.4 years ago by ▴ 70 • written 17.4 years ago by ▴ 120
0
votes
1
reply
732
views
Problems installing AnnotationDbi on RHEL4 using biocLite
updated 17.4 years ago by ★ 7.2k • written 17.4 years ago by ★ 3.4k
0
votes
6
replies
1.8k
views
Sc03b_MR_v04 CDF package
Genetics Yeast cdf Genetics Yeast cdf
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 50
0
votes
1
reply
792
views
Compare subsets using only probesets mapped to chromosome 10
affy affy
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 20
0
votes
0
replies
1.0k
views
SNPs data analysis
Normalization beadarray Normalization beadarray
17.4 years ago Mondher GATRI ▴ 10
0
votes
0
replies
950
views
Combining gdPlot and matplot images
17.4 years ago Amanda Miotto ▴ 120
0
votes
3
replies
1.4k
views
General question about library files
cdf affy cdf affy
updated 17.4 years ago by ★ 13k • written 17.4 years ago by ▴ 60
0
votes
0
replies
680
views
Error with normexp in limma background correction
limma limma
17.4 years ago Gordon Smyth 53k
0
votes
0
replies
799
views
Error with normexp in limma background correction
17.4 years ago Augusto Rendon ▴ 10
0
votes
0
replies
764
views
makePdInfoPackage failure
affy affy
17.4 years ago Arkady ▴ 60
0
votes
1
reply
473
views
Using probes2table without affy probeset IDs
affy affy
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 10
0
votes
1
reply
1.1k
views
BiomaRt annotation for the affy6.0 snps
Annotation affy biomaRt Annotation affy biomaRt
updated 17.4 years ago by ▴ 40 • written 17.4 years ago by ▴ 320
0
votes
1
reply
1.2k
views
black lokal lädt dich zu den lokalisten ein.
17.5 years ago • updated 17.4 years ago friends@lokalisten.de ▴ 30
0
votes
0
replies
1.6k
views
limma warning: Estimation of var.prior failed
GO limma GO limma
17.4 years ago Georg Otto ▴ 510
0
votes
2
replies
1.8k
views
ReadAffy crashes on mac
Preprocessing affy convert affxparser affyio BUS Preprocessing affy convert affxparser
updated 17.4 years ago by ★ 1.2k • written 17.4 years ago by ▴ 40
0
votes
1
reply
1.4k
views
Analysis tips for two-color oligo arrays with common reference and dye swap
Microarray Normalization Microarray Normalization
updated 17.4 years ago by ▴ 970 • written 17.4 years ago by ▴ 10
0
votes
0
replies
797
views
Can't access biomaRt with mysql
biomaRt biomaRt
17.4 years ago Richard Pearson ▴ 390
0
votes
0
replies
948
views
limma design and biolrep matrix, duplicateCorrelation
17.4 years ago Glyn Bradley ▴ 40
0
votes
1
reply
942
views
Marts downloads
updated 17.4 years ago by ▴ 600 • written 17.4 years ago by ▴ 120
0
votes
2
replies
1.2k
views
GenomeGraphs
updated 17.4 years ago by ▴ 600 • written 17.4 years ago by ▴ 120
0
votes
1
reply
1.5k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 200
0
votes
0
replies
1.4k
views
DNAcopy segments.p function / Scoring CNVs
affy DNAcopy affy DNAcopy
17.4 years ago marco zucchelli ▴ 320
0
votes
4
replies
1.7k
views
difference between rmaPLM and default fitPLM?
GO GO
17.4 years ago Jenny Drnevich ★ 2.0k
0
votes
0
replies
1.3k
views
Limma-design matrix for technical replication
Microarray Genetics oligo Microarray Genetics oligo
17.4 years ago Gordon Smyth 53k
0
votes
1
reply
1.0k
views
BioC2008 Talks and Lab Materials?
Alignment GO Biostrings Alignment GO Biostrings
updated 17.4 years ago by ▴ 540 • written 17.4 years ago by ★ 2.0k
0
votes
1
reply
1.1k
views
limits/thresholds for arrayWeights in the limma package
Genetics limma Genetics limma
updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 30
0
votes
1
reply
881
views
RegGrn - illumina metrics file
updated 17.4 years ago by ★ 3.6k • written 17.4 years ago by ▴ 320
0
votes
1
reply
827
views
KEGG annotations for worm (c. elegans)
Annotation Annotation
updated 17.4 years ago by ★ 7.2k • written 17.4 years ago by ▴ 10
0
votes
1
reply
1.1k
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 40
0
votes
4
replies
1.8k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 200
0
votes
16
replies
2.8k
views
missing value
cdf affy affyQCReport cdf affy affyQCReport
updated 17.4 years ago by 16k • written 17.4 years ago by ▴ 200
0
votes
4
replies
1.6k
views
(no subject)
Genetics Genetics
updated 17.4 years ago by 21k • written 17.4 years ago by ▴ 60
0
votes
0
replies
889
views
3 Courses*** R/Splus Fundamentals and Programming Techniques: September 2008 at 3 locations by XLSolutions Corp
17.4 years ago sue@xlsolutions-corp.com ▴ 570
0
votes
1
reply
1.6k
views
Limma-design matrix for technical replication
Genetics oligo Genetics oligo
updated 17.4 years ago by ★ 2.0k • written 17.4 years ago by ▴ 10
0
votes
0
replies
929
views
Link to picture: Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2 affy limma gcrma hgu133plus2 affy limma gcrma
17.4 years ago Boel Brynedal ▴ 200
0
votes
2
replies
2.7k
views
problem with tkrplot installation
limmaGUI limmaGUI
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 20
0
votes
0
replies
1.2k
views
question about pamr.listgenes ....
pamr pamr
17.4 years ago ALok ▴ 170
0
votes
0
replies
898
views
LIMMA - within and between array technical replicates
17.4 years ago Dries Knapen ▴ 10
0
votes
1
reply
896
views
cdf file
cdf cdf
updated 17.4 years ago by ★ 1.1k • written 17.4 years ago by ▴ 10
0
votes
0
replies
831
views
Extracting Intensities from LIMMA with Reference Design
Microarray Clustering Microarray Clustering
17.4 years ago Lin Huffman ▴ 20
0
votes
0
replies
754
views
pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo
17.4 years ago Bramoulle Alexandre ▴ 10
0
votes
2
replies
758
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preparing packages for use with R and Bioconductor
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 50
0
votes
3
replies
1.8k
views
Using biomaRt to check probe locations
Annotation hgu133plus2 probe biomaRt Annotation hgu133plus2 probe biomaRt
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 100
0
votes
1
reply
575
views
same value in an affy exprset
hgu133plus2 gcrma hgu133plus2 gcrma
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 10
0
votes
4
replies
1.5k
views
RMA on a batch with NA values
probe probe
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 570
0
votes
1
reply
1.2k
views
ABPkgBuilder question
Organism AnnBuilder Organism AnnBuilder
updated 17.4 years ago by ★ 7.2k • written 17.4 years ago by ▴ 40
0
votes
1
reply
2.9k
views
topTable; fold-change and data extraction
Microarray GO probe Microarray GO probe
updated 17.4 years ago by ▴ 750 • written 17.4 years ago by ▴ 40
0
votes
1
reply
921
views
how to fastest go from Affymetrix HGU-133 Plus 2.0 chip tiff files to cel files?
probe probe
updated 17.4 years ago by ★ 2.4k • written 17.4 years ago by ▴ 270
0
votes
0
replies
744
views
Comprehensive Healthcare List
Coverage Coverage
17.4 years ago pundit ▴ 10
0
votes
2
replies
969
views
drinks anyone?
17.4 years ago Gordon Smyth 53k
46,719 results • Page 742 of 935
Recent ...
Replies
Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package by Nguyen • 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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