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0
replies
1.1k
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how do I add pheno data after making AffyBatch object
Microarray
Cancer
Microarray
Cancer
21.9 years ago
James W. MacDonald
68k
0
votes
0
replies
1.0k
views
[limma] heatDiagram function doubts
21.9 years ago
Marcelo Luiz de Laia
▴ 770
0
votes
3
replies
1.7k
views
qc.stats error with mgu74av2
mgu74av2
probe
simpleaffy
mgu74av2
probe
simpleaffy
updated 21.9 years ago by
Crispin Miller
★ 1.1k • written 21.9 years ago by
Dick Beyer
★ 1.4k
0
votes
1
reply
1.0k
views
bug in limma?
limma
limma
updated 21.9 years ago by
Simon Melov
▴ 340 • written 21.9 years ago by
Gordon Smyth
53k
0
votes
0
replies
838
views
Re: Normalization with cDNA array
Normalization
Normalization
21.9 years ago
Simon Lin
▴ 210
0
votes
0
replies
600
views
Re: Just a quick question
limma
limma
21.9 years ago
Gordon Smyth
53k
0
votes
0
replies
1.2k
views
normalize.quantiles generating incorrect output
Normalization
Cancer
affy
Normalization
Cancer
affy
21.9 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
719
views
Limma: reading in additional spot data (flags)
limma
limma
21.9 years ago
Gordon Smyth
53k
0
votes
0
replies
1.0k
views
Normalization with cDNA array, Bioconductor Digest, Vol 11, Issue 44
Microarray
Normalization
Microarray
Normalization
21.9 years ago
Christopher Wilkinson
▴ 140
0
votes
4
replies
1.5k
views
Recent changes to Bioconductor packages
limma
Rintact
limma
Rintact
22.0 years ago • updated 21.9 years ago
madman@jimmy.harvard.edu
▴ 850
0
votes
0
replies
1.0k
views
normalize.quantiles generating incorrect output
Normalization
Normalization
21.9 years ago
Jeffrey Chang
▴ 40
0
votes
0
replies
1.3k
views
rhdf5 fails
rhdf5
rhdf5
21.9 years ago
Fujito Atsuya
▴ 20
0
votes
0
replies
656
views
Normalization with cDNA array
Normalization
Normalization
21.9 years ago
Joyce Gu
▴ 200
0
votes
0
replies
1.2k
views
Re: trouble installing "affy" package
Cancer
Biobase
tkWidgets
affy
Cancer
Biobase
tkWidgets
affy
21.9 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
992
views
Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Bioconductor Digest, Vol 11, Issue 40
Microarray
Normalization
Microarray
Normalization
updated 21.9 years ago by
Wolfgang Huber
★ 13k • written 21.9 years ago by
Christopher Wilkinson
▴ 140
0
votes
3
replies
1.2k
views
M vs A plot
Cancer
Cancer
updated 21.9 years ago by
michael watson IAH-C
★ 3.4k • written 21.9 years ago by
Richard Friedman
★ 2.0k
0
votes
2
replies
1.2k
views
bug in limma?
updated 21.9 years ago by
James Wettenhall
▴ 1000 • written 21.9 years ago by
Simon Melov
▴ 340
0
votes
0
replies
718
views
technical reps vs bio reps in Limma
limma
limma
21.9 years ago
Simon Melov
▴ 20
0
votes
3
replies
2.9k
views
trouble installing "affy" package
Biobase
tkWidgets
affy
Biobase
tkWidgets
affy
21.9 years ago
Jeffrey Chang
▴ 40
0
votes
5
replies
2.0k
views
Plot function
21.9 years ago
Joyce Gu
▴ 200
0
votes
0
replies
2.2k
views
Limma Fit - Error: (subscript) logical subscript too long
limma
limma
21.9 years ago
Simon Melov
▴ 340
0
votes
1
reply
1.0k
views
Contrast, help
updated 21.9 years ago by
Sean Davis
21k • written 21.9 years ago by
Marcelo Luiz de Laia
▴ 770
0
votes
0
replies
797
views
downloading cdf packages by hand?
GO
GO
21.9 years ago
Caroline Johnston
▴ 70
0
votes
0
replies
1.1k
views
Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Biocondu ctor Digest, Vol 11, Issue 38
Microarray
Preprocessing
limma
marray
convert
oligo
Microarray
Preprocessing
limma
marray
21.9 years ago
michael watson IAH-C
★ 3.4k
0
votes
3
replies
1.1k
views
Limma: setting expression values to NA
updated 21.9 years ago by
Gordon Smyth
53k • written 21.9 years ago by
Edo Plantinga
▴ 50
0
votes
4
replies
1.3k
views
Limma:short question
limma
limma
updated 21.9 years ago by
Gordon Smyth
53k • written 21.9 years ago by
Julia Engelmann
▴ 130
0
votes
0
replies
1.0k
views
Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Bioconductor Digest, Vol 11, Issue 38
Microarray
Preprocessing
limma
marray
convert
oligo
Microarray
Preprocessing
limma
marray
21.9 years ago
Christopher Wilkinson
▴ 140
0
votes
0
replies
1.3k
views
Conference announcement: Compstat 2004
Visualization
Bayesian
Classification
Clustering
Regression
Visualization
Bayesian
21.9 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
727
views
a semi-legal question: linking to the BioC mailing lis t
Cancer
Cancer
21.9 years ago
Smith, Brandon
▴ 10
0
votes
2
replies
1.5k
views
iterative gcrma on 92 slides?
Normalization
mgu74av2
gcrma
PROcess
Normalization
mgu74av2
gcrma
PROcess
updated 21.9 years ago by
Francois Collin
▴ 130 • written 21.9 years ago by
Dick Beyer
★ 1.4k
0
votes
0
replies
746
views
Limma: reading in additional spot data (flags)
limma
limma
21.9 years ago
Edo Plantinga
▴ 50
0
votes
0
replies
594
views
GetBioC and mirrors
21.9 years ago
Stefano Volinia
▴ 10
0
votes
0
replies
898
views
p-value difference between R-affy and MAS5
21.9 years ago
t-kawai@hhc.eisai.co.jp
▴ 50
0
votes
2
replies
784
views
GetBioC misbehavior?
updated 21.9 years ago by
James W. MacDonald
68k • written 21.9 years ago by
Sean Davis
21k
0
votes
2
replies
1.2k
views
a semi-legal question: linking to the BioC mailing list
Cancer
Cancer
updated 22.0 years ago by
mai98ftu@studserv.uni-leipzig.de
▴ 140 • written 22.0 years ago by
Ramon Diaz
★ 1.1k
0
votes
0
replies
831
views
Re: Bioconductor Digest, Vol 11, Issue 36
22.0 years ago
Alex F. Bokov
▴ 50
0
votes
0
replies
1.2k
views
XML and Mac OS X
22.0 years ago
jtleek@u.washington.edu
▴ 10
0
votes
0
replies
816
views
A suggestion on the Searchable mail archives
22.0 years ago
YUK FAI LEUNG
▴ 140
0
votes
1
reply
1.3k
views
limma: no residual degrees of freedom
Microarray
limma
Microarray
limma
updated 22.0 years ago by
Gordon Smyth
53k • written 22.0 years ago by
Straubhaar, Juerg
▴ 300
0
votes
1
reply
1.2k
views
Limma: four suggestions related to weights and background correction
Normalization
Cancer
limma
Normalization
Cancer
limma
updated 22.0 years ago by
Gordon Smyth
53k • written 22.0 years ago by
Ramon Diaz
★ 1.1k
0
votes
3
replies
2.3k
views
RE:proper pooling design
Microarray
Normalization
affy
makecdfenv
limma
marray
Microarray
Normalization
affy
limma
written 22.0 years ago by
Stephen Moore
▴ 70
0
votes
0
replies
844
views
Dye swap time course experiment in marrayinput
Cancer
Cancer
22.0 years ago
Richard Friedman
★ 2.0k
0
votes
5
replies
1.7k
views
Problem with read.marrayRaw
marray
marray
updated 22.0 years ago by
Ron Ophir
▴ 80 • written 22.0 years ago by
Joyce Gu
▴ 200
0
votes
1
reply
1.0k
views
Mu11KsubA and Mu11KsubB
mu11ksuba
mu11ksubb
affy
mu11ksuba
mu11ksubb
affy
updated 22.0 years ago by
Simon Lin
▴ 210 • written 22.0 years ago by
Yen Lin Chia
▴ 50
0
votes
0
replies
962
views
large data set correlations?
probe
probe
22.0 years ago
Park, Richard
▴ 220
0
votes
0
replies
1.1k
views
Help for analysis a Factorial experiment
22.0 years ago
Marcelo Luiz de Laia
▴ 770
0
votes
2
replies
1.1k
views
IMAGE PLOTS.
affy
affy
updated 22.0 years ago by
Laurent Gautier
★ 2.3k • written 22.0 years ago by
Stephen Nyangoma
▴ 230
0
votes
1
reply
1.2k
views
Problem with marray
marray
marray
22.0 years ago
Patrice Godard
▴ 20
0
votes
1
reply
870
views
How to output the results in MAANOVA
maanova
maanova
updated 22.0 years ago by
Gordon Smyth
53k • written 22.0 years ago by
Lang Chen
▴ 100
0
votes
0
replies
1.1k
views
Re: metaData
Annotation
GO
Yeast
probe
Annotation
GO
Yeast
probe
22.0 years ago
John Zhang
★ 2.9k
46,706 results • Page
904 of 935
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Comment: Opportunity to host EuroBioC2026 Preconference workshops!
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TikTsokaasocissalpc
• 0
Just like attending workshops helps you improve skills in a field, playing 8 Ball Pool helps sharpen your strategy and precision. You can d…
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
TikTsokaasocissalpc
• 0
Thanks for sharing this update. Clear migration timelines and documentation are essential for learners and researchers alike. In healthcare…
Comment: ATACseq rudimentary questions
by
4747
• 0
Thank you so much for being detailed, all makes sense now
Answer: How to do differential expresion across time serise with edgeR?
by
Gordon Smyth
53k
You actually haven't done any DE analysis at all, you've just selected for genes with either zero or large D0 counts. Another issue is tha…
Answer: ATACseq rudimentary questions
by
Kevin Blighe
★ 4.0k
For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Votes
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
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