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0
votes
0
replies
726
views
help loading libraries
21.9 years ago
Roger Vallejo
▴ 120
0
votes
2
replies
1.5k
views
get exprs from AffyBatch
Microarray
Cancer
Microarray
Cancer
updated 21.9 years ago by
Rafael A. Irizarry
★ 2.3k • written 21.9 years ago by
James W. MacDonald
68k
0
votes
0
replies
870
views
find and replace, average of 4 rows
21.9 years ago
Dr Gyorffy Balazs
▴ 320
0
votes
1
reply
1.0k
views
read.maimages
limma
limma
updated 21.9 years ago by
Gordon Smyth
53k • written 21.9 years ago by
Jason Skelton
▴ 510
0
votes
3
replies
2.4k
views
how do I add pheno data after making AffyBatch object
updated 21.9 years ago by
Rafael A. Irizarry
★ 2.3k • written 21.9 years ago by
Hao Liu
▴ 130
0
votes
0
replies
1.1k
views
how do I add pheno data after making AffyBatch object
Microarray
Cancer
Microarray
Cancer
21.9 years ago
James W. MacDonald
68k
0
votes
0
replies
1.0k
views
[limma] heatDiagram function doubts
21.9 years ago
Marcelo Luiz de Laia
▴ 770
0
votes
3
replies
1.7k
views
qc.stats error with mgu74av2
mgu74av2
probe
simpleaffy
mgu74av2
probe
simpleaffy
updated 21.9 years ago by
Crispin Miller
★ 1.1k • written 22.0 years ago by
Dick Beyer
★ 1.4k
0
votes
1
reply
1.0k
views
bug in limma?
limma
limma
updated 22.0 years ago by
Simon Melov
▴ 340 • written 22.0 years ago by
Gordon Smyth
53k
0
votes
0
replies
841
views
Re: Normalization with cDNA array
Normalization
Normalization
22.0 years ago
Simon Lin
▴ 210
0
votes
0
replies
601
views
Re: Just a quick question
limma
limma
22.0 years ago
Gordon Smyth
53k
0
votes
0
replies
1.2k
views
normalize.quantiles generating incorrect output
Normalization
Cancer
affy
Normalization
Cancer
affy
22.0 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
721
views
Limma: reading in additional spot data (flags)
limma
limma
22.0 years ago
Gordon Smyth
53k
0
votes
0
replies
1.0k
views
Normalization with cDNA array, Bioconductor Digest, Vol 11, Issue 44
Microarray
Normalization
Microarray
Normalization
22.0 years ago
Christopher Wilkinson
▴ 140
0
votes
4
replies
1.5k
views
Recent changes to Bioconductor packages
limma
Rintact
limma
Rintact
22.0 years ago
madman@jimmy.harvard.edu
▴ 850
0
votes
0
replies
1.0k
views
normalize.quantiles generating incorrect output
Normalization
Normalization
22.0 years ago
Jeffrey Chang
▴ 40
0
votes
0
replies
1.3k
views
rhdf5 fails
rhdf5
rhdf5
22.0 years ago
Fujito Atsuya
▴ 20
0
votes
0
replies
657
views
Normalization with cDNA array
Normalization
Normalization
22.0 years ago
Joyce Gu
▴ 200
0
votes
0
replies
1.2k
views
Re: trouble installing "affy" package
Cancer
Biobase
tkWidgets
affy
Cancer
Biobase
tkWidgets
affy
22.0 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
995
views
Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Bioconductor Digest, Vol 11, Issue 40
Microarray
Normalization
Microarray
Normalization
updated 22.0 years ago by
Wolfgang Huber
★ 13k • written 22.0 years ago by
Christopher Wilkinson
▴ 140
0
votes
3
replies
1.2k
views
M vs A plot
Cancer
Cancer
updated 22.0 years ago by
michael watson IAH-C
★ 3.4k • written 22.0 years ago by
Richard Friedman
★ 2.0k
0
votes
2
replies
1.2k
views
bug in limma?
updated 22.0 years ago by
James Wettenhall
▴ 1000 • written 22.0 years ago by
Simon Melov
▴ 340
0
votes
0
replies
721
views
technical reps vs bio reps in Limma
limma
limma
22.0 years ago
Simon Melov
▴ 20
0
votes
3
replies
2.9k
views
trouble installing "affy" package
Biobase
tkWidgets
affy
Biobase
tkWidgets
affy
22.0 years ago
Jeffrey Chang
▴ 40
0
votes
5
replies
2.0k
views
Plot function
22.0 years ago
Joyce Gu
▴ 200
0
votes
0
replies
2.2k
views
Limma Fit - Error: (subscript) logical subscript too long
limma
limma
22.0 years ago
Simon Melov
▴ 340
0
votes
1
reply
1.0k
views
Contrast, help
updated 22.0 years ago by
Sean Davis
21k • written 22.0 years ago by
Marcelo Luiz de Laia
▴ 770
0
votes
0
replies
799
views
downloading cdf packages by hand?
GO
GO
22.0 years ago
Caroline Johnston
▴ 70
0
votes
0
replies
1.1k
views
Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Biocondu ctor Digest, Vol 11, Issue 38
Microarray
Preprocessing
limma
marray
convert
oligo
Microarray
Preprocessing
limma
marray
22.0 years ago
michael watson IAH-C
★ 3.4k
0
votes
3
replies
1.1k
views
Limma: setting expression values to NA
updated 22.0 years ago by
Gordon Smyth
53k • written 22.0 years ago by
Edo Plantinga
▴ 50
0
votes
4
replies
1.3k
views
Limma:short question
limma
limma
updated 22.0 years ago by
Gordon Smyth
53k • written 22.0 years ago by
Julia Engelmann
▴ 130
0
votes
0
replies
1.0k
views
Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Bioconductor Digest, Vol 11, Issue 38
Microarray
Preprocessing
limma
marray
convert
oligo
Microarray
Preprocessing
limma
marray
22.0 years ago
Christopher Wilkinson
▴ 140
0
votes
0
replies
1.3k
views
Conference announcement: Compstat 2004
Visualization
Bayesian
Classification
Clustering
Regression
Visualization
Bayesian
22.0 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
731
views
a semi-legal question: linking to the BioC mailing lis t
Cancer
Cancer
22.0 years ago
Smith, Brandon
▴ 10
0
votes
2
replies
1.5k
views
iterative gcrma on 92 slides?
Normalization
mgu74av2
gcrma
PROcess
Normalization
mgu74av2
gcrma
PROcess
updated 22.0 years ago by
Francois Collin
▴ 130 • written 22.0 years ago by
Dick Beyer
★ 1.4k
0
votes
0
replies
749
views
Limma: reading in additional spot data (flags)
limma
limma
22.0 years ago
Edo Plantinga
▴ 50
0
votes
0
replies
595
views
GetBioC and mirrors
22.0 years ago
Stefano Volinia
▴ 10
0
votes
0
replies
902
views
p-value difference between R-affy and MAS5
22.0 years ago
t-kawai@hhc.eisai.co.jp
▴ 50
0
votes
2
replies
786
views
GetBioC misbehavior?
updated 22.0 years ago by
James W. MacDonald
68k • written 22.0 years ago by
Sean Davis
21k
0
votes
2
replies
1.2k
views
a semi-legal question: linking to the BioC mailing list
Cancer
Cancer
updated 22.0 years ago by
mai98ftu@studserv.uni-leipzig.de
▴ 140 • written 22.0 years ago by
Ramon Diaz
★ 1.1k
0
votes
0
replies
833
views
Re: Bioconductor Digest, Vol 11, Issue 36
22.0 years ago
Alex F. Bokov
▴ 50
0
votes
0
replies
1.2k
views
XML and Mac OS X
22.0 years ago
jtleek@u.washington.edu
▴ 10
0
votes
0
replies
817
views
A suggestion on the Searchable mail archives
22.0 years ago
YUK FAI LEUNG
▴ 140
0
votes
1
reply
1.3k
views
limma: no residual degrees of freedom
Microarray
limma
Microarray
limma
updated 22.0 years ago by
Gordon Smyth
53k • written 22.0 years ago by
Straubhaar, Juerg
▴ 300
0
votes
1
reply
1.2k
views
Limma: four suggestions related to weights and background correction
Normalization
Cancer
limma
Normalization
Cancer
limma
updated 22.0 years ago by
Gordon Smyth
53k • written 22.0 years ago by
Ramon Diaz
★ 1.1k
0
votes
3
replies
2.3k
views
RE:proper pooling design
Microarray
Normalization
affy
makecdfenv
limma
marray
Microarray
Normalization
affy
limma
written 22.0 years ago by
Stephen Moore
▴ 70
0
votes
0
replies
845
views
Dye swap time course experiment in marrayinput
Cancer
Cancer
22.0 years ago
Richard Friedman
★ 2.0k
0
votes
5
replies
1.8k
views
Problem with read.marrayRaw
marray
marray
updated 22.0 years ago by
Ron Ophir
▴ 80 • written 22.0 years ago by
Joyce Gu
▴ 200
0
votes
1
reply
1.0k
views
Mu11KsubA and Mu11KsubB
mu11ksuba
mu11ksubb
affy
mu11ksuba
mu11ksubb
affy
updated 22.0 years ago by
Simon Lin
▴ 210 • written 22.0 years ago by
Yen Lin Chia
▴ 50
0
votes
0
replies
963
views
large data set correlations?
probe
probe
22.0 years ago
Park, Richard
▴ 220
46,711 results • Page
904 of 935
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Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Votes
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
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