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Created An Answer With At Least 3 Up-Votes
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following contributors:
8 years, 6 months ago
United States
Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 30.
8 years, 6 months ago
United States
error with many packages: "Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'"
8 years, 6 months ago
United States
Error in GRanges: could not find symbol "recursive" in environment of the generic function
8 years, 6 months ago
United States
How to convert a GRangesList object into a GRanges object?
8 years, 6 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
8 years, 6 months ago
WEHI, Melbourne, Australia
Subsetting ELists and Applying sva to Iterative Differential Gene Expression Tests
8 years, 6 months ago
WEHI, Melbourne, Australia
Representative gene expression value in one condition with several replicates
8 years, 6 months ago
WEHI, Melbourne, Australia
using duplicateCorrelation with limma+voom for RNA-seq data
8 years, 6 months ago
WEHI, Melbourne, Australia
Do the outputs of Limma's competitive gene set methods (camera, romer) require a mutliple testing correction?
8 years, 6 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 6 months ago
WEHI, Melbourne, Australia
goana limma- extract list of DE genes and genes in the enriched GO terms?
8 years, 6 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
8 years, 6 months ago
WEHI, Melbourne, Australia
limma-trend with random effects and/or array weights
8 years, 6 months ago
WEHI, Melbourne, Australia
Examples of concise description of NGS and bioinformatics (with DESEq2 or edgeR) in M&M of biological paper
8 years, 6 months ago
WEHI, Melbourne, Australia
seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
8 years, 6 months ago
WEHI, Melbourne, Australia
how to use "non-standard" species for KEGG / GO analysis in limma?
8 years, 6 months ago
WEHI, Melbourne, Australia
Please share me your helpful comments with edgeR analysis without replicate
8 years, 6 months ago
WEHI, Melbourne, Australia
Different logFC (log2foldchange) values for genes from limma-voom and other tools (edgeR and DESeq2)
8 years, 6 months ago
WEHI, Melbourne, Australia
RNA-Seq, generate batch-free count matrix
8 years, 6 months ago
WEHI, Melbourne, Australia
modeling heteroscedasticity in limma-voom for RNA-Seq data analysis
8 years, 6 months ago
WEHI, Melbourne, Australia
Differential expression of FPKM from RNA-seq data using limma and voom()
8 years, 6 months ago
WEHI, Melbourne, Australia
Trouble identifying differentially expressed genes on Affymetrix Human Gene 2.0.ST using R with oligo and limma package
8 years, 6 months ago
WEHI, Melbourne, Australia
Test whether expression levels of two gene sets are significantly different
8 years, 6 months ago
WEHI, Melbourne, Australia
Fit a multinomial to RNA-seq count data
8 years, 6 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
8 years, 6 months ago
European Union
Does anyone need to install an R package which is used by another package as importFrom(.,.)?
8 years, 6 months ago
China/Guangzhou/Southern Medical Univer…
How to do simple Fisher' exact test for overlapped genomic interval in R?
8 years, 6 months ago
Australia
how to extract read alignments from reads aligning in mulitple locations
8 years, 6 months ago
Seattle, WA, United States
Extracting Coordinates of startcodon from Grangeslist
8 years, 6 months ago
Seattle, WA, United States
extract subsequence(s) from DNAStringSet with getSeq
8 years, 6 months ago
Seattle, WA, United States
about setdiff() and meta-information in GRanges
8 years, 6 months ago
Seattle, WA, United States
How to create tx2gene data.frame when there's no TxDb object for the organism you are working with.
8 years, 6 months ago
Seattle, WA, United States
overlapsAny for elements in GRangesList
8 years, 6 months ago
Seattle, WA, United States
Error when running "locateVariants" function in "VariantAnnotation" package
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