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Giulio Di Giovanni
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540
@giulio-di-giovanni-950
Last seen 10.2 years ago
Maybe it's only a temporary thing, but if I follow the help
> library(annotate)
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
> getSEQ("M22490")
[1] "<html xmlns="\" <a="" href="<a href=" http:="" www.w3.org="" 1999="" xhtml"="" rel="nofollow">http://www.w3.org/1999/xhtml" rel="nofollow">http://www.w3.org/1999/xhtml\""> <head xmlns:xi="\" <a="" href="<a href=" http:="" www.w3.org="" 2001="" XInclude"="" rel="nofollow">http://www.w3.org/2001/XInclude" rel="nofollow">http://www.w3.org/2001/XInclude\"">
<meta name="\" ncbi_app\""="" content="\" entrez\""=""/><meta name="\" ncbi_db\""="" content="\" nuccore\""=""/><meta name="\" ncbi_report\""="" content="\" fasta\""=""/><meta name="\" ncbi_format\""="" content="\" html\""=""/><meta name="\" ncbi_pagesize\""="" content="\" 20\""=""/><meta na...="" etc="" etc="" etc="" warning="" message:="" in="" readlines(paste("http:="" www.ncbi.nlm.nih.gov="" entrez="" batchseq.cgi?",="" :="" incomplete="" final="" line="" found="" on="" 'http:="" www.ncbi.nlm.nih.gov="" entrez="" b="" atchseq.cgi?cmd="&txt=on&save=&cfm=&list_uids=M22490&db=nucleotide&extr" afeat="16&term=&view=fasta&dispmax=20&SendTo=t&__from=&__to=&__strand='">
>
This it's weird, since only 3 days ago it was working perfectly.
Any hints? NCBI changed the format of their entries and annotate
package has still to be updated? Maybe it's me? my connection?
Any suggestion will be appreciated, I really need it working with no
errors now...
Best,
G
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