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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 15 months ago by ▴ 10 • written 16 months ago by ▴ 180
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Job: Postdoc+PhD position: AI large-language models of single-cell data for cancer immunogenomics
JobPosting AI HPC CuratedAtlasQueryR
18 months ago Stefano Mangiola ▴ 40
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News: EMBO|EMBL Conference "AI and Biology"
EMBL Heidelberg AI Conference
2.1 years ago Wolfgang Huber ★ 13k
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Job: Group Leader (Machine Learning/AI), Centre for Molecular Medicine, University of Oslo
Biology AI Machinelearning Precisionmedicine Norway
3.8 years ago delete • 0
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Job: International PhD rotation students at FIMM-EMBL/DSHealth (University of Helsinki) in Molecular Medicine, Genomics, Bioinformatics, Neuroscience, Com…
ComputationalBiomedicine AI UniversityHelsinki PhD Bioinformatics
4.0 years ago Alyce • 0
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Job: 2 postdoc positions at Lund University, Sweden
CancerMutationAnalysis AI variationinterpreation
5.1 years ago a1mauno • 0
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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