Bioconductor ATACSeq

Showing : ATACSeq • reset

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200

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DiffBind DESeq2 ATACSeq

9 days ago • updated 6 days ago lonn • 0

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DiffBind ATACSeq

29 days ago Pierre Lindenbaum ▴ 10

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637

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ATACseqQC ATACSeq

updated 8 weeks ago by danalvoronov ▴ 10 • written 4 months ago by jfmay • 0

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290

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DiffBind ATACSeq

3 months ago isaromero8888 • 0

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235

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DiffBind edgeR ATACSeq DESeq2

3 months ago Jawahar • 0

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247

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DiffBind ATACSeq

3 months ago inna.gur • 0

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1.6k

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ATACSeq regionCounts csaw

updated 4 months ago by dineika.chandrananda • 0 • written 24 months ago by zgraytho88 • 0

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394

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dba.count DiffBind ATACSeq

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by sophie.hfliu • 0

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1.2k

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ATACSeq

updated 8 months ago by Noah • 0 • written 20 months ago by Taeim • 0

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804

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DiffBind ATACSeq

updated 9 months ago by Malcolm Cook ★ 1.6k • written 9 months ago by Nebat • 0

10 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length