Bioconductor ATACseq

Showing : ATACseq • reset

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830

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DiffBind ATACSeq

updated 9 months ago by Malcolm Cook ★ 1.6k • written 9 months ago by Nebat • 0

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652

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ATACseqQC ATACSeq

updated 8 weeks ago by danalvoronov ▴ 10 • written 5 months ago by jfmay • 0

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244

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DiffBind edgeR ATACSeq DESeq2

3 months ago Jawahar • 0

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405

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dba.count DiffBind ATACSeq

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by sophie.hfliu • 0

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297

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DiffBind ATACSeq

3 months ago isaromero8888 • 0

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1.2k

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ATACSeq

updated 8 months ago by Noah • 0 • written 20 months ago by Taeim • 0

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DiffBind ATACSeq

5 weeks ago Pierre Lindenbaum ▴ 10

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229

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DiffBind DESeq2 ATACSeq

15 days ago • updated 12 days ago lonn • 0

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256

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DiffBind ATACSeq

4 months ago inna.gur • 0

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1.6k

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ATACSeq regionCounts csaw

updated 5 months ago by dineika.chandrananda • 0 • written 2.0 years ago by zgraytho88 • 0

10 results • Page 1 of 1

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Answer: DESeq2 v1.35.0 by Michael Love 41k

That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k

Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.

Answer: DESeq2 v1.35.0 by James W. MacDonald 65k

Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0

I tried also with oligo does not work, any other suggestion?

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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