Bioconductor ATACseq

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599

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sperm Drosophila_melanogaster ATACSeq Normalization SpikeIn

updated 4 months ago by ATpoint ★ 4.8k • written 4 months ago by Katerina • 0

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224

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DiffBind ATACSeq

updated 5 months ago by Michael Love 43k • written 5 months ago by Alpesh Querer ▴ 220

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844

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genomes ATACSeq

6 months ago ronin • 0

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637

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ATACSeq peaks ATAC ChIPpeakAnno

10 months ago Raghad • 0

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671

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DiffBind DESeq2 ATACSeq

11 months ago lonn • 0

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430

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DiffBind ATACSeq

12 months ago Pierre Lindenbaum ▴ 10

6 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

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Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

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