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AnnotationHubData
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1
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2
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1.6k
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AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta
AnnotationHub
AnnotationHubData
2.3 years ago
Thon
• 0
0
votes
0
replies
775
views
Getting the exon co-ordinates and location
exon
AnnotationHubData
2.7 years ago
mahima.g
• 0
0
votes
2
replies
1.9k
views
How to fix warning in makeTxDbFromGFF() when using Gencode M30 (mouse)?
GenomicFeatures
AnnotationHubData
tximeta
updated 3.3 years ago by
Michael Love
43k • written 3.3 years ago by
Pratik Mehta
▴ 10
0
votes
13
replies
5.1k
views
EnrichGO not working with db created from annotationhub
clusterProfiler
AnnotationHubData
GO
updated 3.7 years ago by
Guido Hooiveld
★ 4.1k • written 3.7 years ago by
Lucía
▴ 30
3
votes
3
replies
1.7k
views
I can't run PhyloProfile
AnnotationHubData
PhyloProfile
3.7 years ago
S.t
▴ 10
3
votes
8
replies
4.4k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData
AnnotationForge
3.7 years ago
Saber_J
▴ 10
0
votes
1
reply
982
views
a BioC/R package that display the genome sequence/ mRNA exons/protein domains
AnnotationHubData
updated 5.2 years ago by
Kevin Blighe
★ 4.0k • written 5.2 years ago by
Bogdan
▴ 670
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Comment: Pairwise comparison of multiple groups with different base
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ja569116
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Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
Comment: Are individual-mouse-based statistics possible in CellChat?
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TikTsossakaas33ocissalpc
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Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
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ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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