Showing : AnnotationHubData • reset
1
vote
2
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984
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AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta AnnotationHub AnnotationHubData
14 months ago Thon • 0
0
votes
0
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527
views
Getting the exon co-ordinates and location
exon AnnotationHubData
19 months ago mahima.g • 0
0
votes
2
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1.4k
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How to fix warning in makeTxDbFromGFF() when using Gencode M30 (mouse)?
GenomicFeatures AnnotationHubData tximeta
updated 2.3 years ago by 43k • written 2.3 years ago by ▴ 10
0
votes
13
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3.6k
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EnrichGO not working with db created from annotationhub
clusterProfiler AnnotationHubData GO
updated 2.6 years ago by ★ 4.1k • written 2.6 years ago by ▴ 30
3
votes
3
replies
1.4k
views
I can't run PhyloProfile
AnnotationHubData PhyloProfile
2.6 years ago S.t ▴ 10
3
votes
8
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3.4k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData AnnotationForge
2.7 years ago Saber_J ▴ 10
0
votes
1
reply
780
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a BioC/R package that display the genome sequence/ mRNA exons/protein domains
AnnotationHubData
updated 4.1 years ago by ★ 4.0k • written 4.1 years ago by ▴ 670
7 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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