Bioconductor BSSeq

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386

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dmrseq bsseq

updated 14 days ago by Peter Hickey ▴ 740 • written 21 days ago by Juan Higareda • 0

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156

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bsseq methylation

updated 4 weeks ago by James W. MacDonald 65k • written 4 weeks ago by ja569116 • 0

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1.1k

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bsseq

updated 7 months ago by Peter Hickey ▴ 740 • written 9 months ago by richardallenfriedmanbrooklyn ▴ 20

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2.5k

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bsseq Bsmooth

updated 6 months ago by Adam • 0 • written 9.2 years ago by unmeshj • 0

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2.6k

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Coverage bsseq

updated 6 months ago by Adam • 0 • written 9.7 years ago by Guest User ★ 13k

5 results • Page 1 of 1

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Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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