Bioconductor BSSeq

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382

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dmrseq bsseq

updated 13 days ago by Peter Hickey ▴ 740 • written 21 days ago by Juan Higareda • 0

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155

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bsseq methylation

updated 29 days ago by James W. MacDonald 65k • written 4 weeks ago by ja569116 • 0

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2.5k

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bsseq Bsmooth

updated 6 months ago by Adam • 0 • written 9.2 years ago by unmeshj • 0

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2.6k

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Coverage bsseq

updated 6 months ago by Adam • 0 • written 9.6 years ago by Guest User ★ 13k

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1.1k

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bsseq

updated 7 months ago by Peter Hickey ▴ 740 • written 9 months ago by richardallenfriedmanbrooklyn ▴ 20

5 results • Page 1 of 1

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Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Comment: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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