Bioconductor BSSeq

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2.6k

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Coverage bsseq

updated 6 months ago by Adam • 0 • written 9.7 years ago by Guest User ★ 13k

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2.5k

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bsseq Bsmooth

updated 6 months ago by Adam • 0 • written 9.2 years ago by unmeshj • 0

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1.2k

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bsseq

updated 8 months ago by Peter Hickey ▴ 740 • written 9 months ago by richardallenfriedmanbrooklyn ▴ 20

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392

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dmrseq bsseq

updated 16 days ago by Peter Hickey ▴ 740 • written 24 days ago by Juan Higareda • 0

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159

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bsseq methylation

updated 4 weeks ago by James W. MacDonald 65k • written 4 weeks ago by ja569116 • 0

5 results • Page 1 of 1

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Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

Answer: Handling multiple differential expression comparisons by Michael Love 41k

It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…

Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k

These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…

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Print Differentially Expressed Exons From Dexseq Results

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

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