Bioconductor BatchtoolsParam

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BatchtoolsParam BiocParallel

2.7 years ago • updated 2.5 years ago jianhai.zhang • 0

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BatchtoolsParam MulticoreParam BiocParallel

updated 2.7 years ago by Martin Morgan 25k • written 2.7 years ago by jianhai.zhang • 0

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biocparallel BatchtoolsParam

updated 6.1 years ago by Mike Smith ★ 6.6k • written 6.1 years ago by Chao-Jen Wong ▴ 40

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Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

Hi, what's the output from `dim(spe)`?

Answer: DESeq2- merging technical vs biological replicates by Michael Love 43k

Technical replicates (more sequencing of same library) you can use `collapseReplicates()`. But biological replicates are best handled wi…

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