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BioC2023
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News:
BioC2023 abstract submission is now open!
presentation
BioC2023
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community
Bioconductor
written 15 months ago by
Maria Doyle
▴ 70
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News:
Save the Date Bioc2023!
Bioc2023
Conference
Bioconductor
18 months ago
shepherl
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News:
Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor
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BioC2023
11 months ago
Maria Doyle
▴ 70
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News:
Bioconductor Long-term Contribution Award
Bioc2023
Bioconductor
Awards
Recognition
12 months ago • updated 11 months ago
shepherl
3.9k
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News:
Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor
BioC2023
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10 months ago
Maria Doyle
▴ 70
0
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0
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356
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News:
May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor
Awards
Bioc2023
Recognition
11 months ago
shepherl
3.9k
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481
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News:
Junior Developer or New Package Developer Award
Bioconductor
Recognition
Bioc2023
Awards
12 months ago • updated 11 months ago
shepherl
3.9k
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507
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News:
Nominations for Bioconductor 2023 Awards!
Awards
Bioconductor
Bioc2023
Recognition
12 months ago • updated 11 months ago
shepherl
3.9k
1
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576
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News:
Last Week to Nominate for Bioc2023 Awards!
Bioconductor
Bioc2023
Recognition
Awards
11 months ago
shepherl
3.9k
0
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0
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539
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News:
Bioconductor Community Engagement, Outreach, and Diversity Award
Awards
Bioconductor
Bioc2023
Recognition
12 months ago • updated 11 months ago
shepherl
3.9k
0
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559
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News:
Seeking members for BioC2023 organizing committee
BioC2023
Bioconductor
community
15 months ago
Maria Doyle
▴ 70
11 results • Page
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Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
Gordon Smyth
50k
Regardless of whether it agrees with `t.test` or not, the formula given in the original question is correct and yours is not. Your formula …
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
nbay13
• 0
A little late to the party, but I found that using the equation you specified, the p-values are actually slightly off from base R's `t.test…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
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